Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1256 ATGAAAGCCACCACGAAGCTGAAACGCATATCTCCGCCATGGCAACGATCACGGACTTCTTATTCTTCAACAATCTACCCTCTTAGGAATAATAAAACTCCATCATCTCCTCTACTAGATGAATTCACAAAATACTGCTACCAAAGAGACCTACCCAGAGCCATTAAAGCCATTGATGCCATGCAGAAACACCAAATCTGGGCCGATTCTATCACCTACTCCGAGCTCATCAAGTGCTGCTTAGCTAAAGGATCCGTAGAACAAGGTAGATTAATCCACAAGCACGTGTTTTCAACTGGGTACGAGCCAAAAACGTTCTTGATCAACATCTTCCTTAACATGTACGTAAAATTTGGTTTGTTGGATGAAGCACAGAAACTGTTTGACAAAATGCCTGAGAGAAACGTTGTTTCATGGACCACAATGATATCTGCTTATACTAATTCCAAGCTCAATCACGAGGCTTTGGAATTTCTTGTGTTGATGCTTAGAGAAGGTGTTAGACCGAACATGTTCACTTACTCCTCGGTTTTAAGAGCTTGTGATAAGTTGTGGATCCTTGAGCAGCTCCATTGTAGCATAATAAAGGTCGGGTTAGAGTCCGATGTGTATGTTAGGAGTGCTCTGATCGATATTTACTCGAAATTGGGCCAAGTAGAAGATGGCTTGAGCGTTTTTAACGAGATGGTAACAAAAGATTTGGTCGTTTGGAACTCCATTATAACCGGGTTTGCTCAGAACGAAGAAGGTGAAGAAGCTTTGTGTTATTACAAAAGAATGAAGATGGCTGGTTTTCCACCCGATCAATCCACATTAACAAGTGTCCTACGGGCCTGTACTGGGCTTGCCCTGTTAGAACTGGGCCAACAGGTCCACGTTCACGTGTTGAAATTCGATCACGACCTAATCCTTAGCAATGCAATTCTGGACATGTATTGCAAGTGTGGTAGTGTAGAAGATGCAACCTCTCTTTTCACCAAAATGTCTGAAAAAAGGGATGTAATATCGTGGAGCACTATGATTTCAGGGTTAGCCCAAAATGGGTTTAGTAAAGAAGCGCTCAAGTTATTCGACTCGATGAAAGCTTCAGGGCTGAAACCGAATAGTATAACAATACTTGGTGTCCTTTTCGCATGTAGCCATGCTGGTCTGATTGAAGAGGGGTGGTATTATTTCCAGTCGATGAAAGAACTCTTTGGTATAGAACCGTCAAGAGAGCATTATGGTTGCGTGCTTGATCTTCTAGGAAGGGCTGGAAAACTCGATAAAGCAGTCAAGTTAATTGAAGAAATGAACTACGACCCAGATGCAGTTACTTGGAGAACTTTGCTTGGTGCTTGTAGGGTTCACCGTAATATTGATCTAGCTATTTATGCGGCGAAGCAGGTTATAAAACTAGATCCACTAGATGCAGGAACTTACATACTCTTATCGAATATTTACGCTAAGTGTCAAAGATGGGAAGATGTTGAGCAAGTTAGGAGAGCCATGACAGCAAAAGGGGTGAAGAAAGAACCTGGGTGTAGTTGGGTTGAAGTAGATAAACAAATACATGCTTTTATTCTAGGAGATGATTCACATCCAGTAATTGACGAGATTAAGACCCGCCTAATTCAATTGATTAGTCGACTAATGGGATTCGGGTATGTCCCAGACACAACCTTTGTACTGCAAGATCTGGAGGGCGAACAGATGGAAGATTCGCTTCTATATCATAGTGAAAAACTTGCTATTGTGTTTGGCTTGATGAGCTTGCCTAAGGTAAAGACGATTAGGATACGGAAAAACTTGAGGATTTGTGGAGACTGTCATGCCTTTGCAAAAATGGCAACTAAGGTGGAAGGTCGTTGTATTGTTATTAGAGATCCTATTCGATATCATCATTTTCACGATGGTGTTTGCTGTTGTGGGGACTATTGGTAG 1923 41.81 MKATTKLKRISPPWQRSRTSYSSTIYPLRNNKTPSSPLLDEFTKYCYQRDLPRAIKAIDAMQKHQIWADSITYSELIKCCLAKGSVEQGRLIHKHVFSTGYEPKTFLINIFLNMYVKFGLLDEAQKLFDKMPERNVVSWTTMISAYTNSKLNHEALEFLVLMLREGVRPNMFTYSSVLRACDKLWILEQLHCSIIKVGLESDVYVRSALIDIYSKLGQVEDGLSVFNEMVTKDLVVWNSIITGFAQNEEGEEALCYYKRMKMAGFPPDQSTLTSVLRACTGLALLELGQQVHVHVLKFDHDLILSNAILDMYCKCGSVEDATSLFTKMSEKRDVISWSTMISGLAQNGFSKEALKLFDSMKASGLKPNSITILGVLFACSHAGLIEEGWYYFQSMKELFGIEPSREHYGCVLDLLGRAGKLDKAVKLIEEMNYDPDAVTWRTLLGACRVHRNIDLAIYAAKQVIKLDPLDAGTYILLSNIYAKCQRWEDVEQVRRAMTAKGVKKEPGCSWVEVDKQIHAFILGDDSHPVIDEIKTRLIQLISRLMGFGYVPDTTFVLQDLEGEQMEDSLLYHSEKLAIVFGLMSLPKVKTIRIRKNLRICGDCHAFAKMATKVEGRCIVIRDPIRYHHFHDGVCCCGDYW 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31386880 31388844 - Conep03aG0176300.1 Cone3ag1256 434715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1256 640 Pfam PPR repeat family 233 279 IPR002885 -
Cone3ag1256 640 Pfam PPR repeat family 134 181 IPR002885 -
Cone3ag1256 640 Pfam PPR repeat family 332 375 IPR002885 -
Cone3ag1256 640 SUPERFAMILY TPR-like 204 490 IPR011990 GO:0005515(InterPro)
Cone3ag1256 640 FunFam Pentatricopeptide repeat-containing protein mitochondrial 289 395 - -
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Cone3ag1256 640 Pfam PPR repeat 407 431 IPR002885 -
Cone3ag1256 640 Pfam PPR repeat 306 331 IPR002885 -
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Cone3ag1256 640 PANTHER OS07G0578800 PROTEIN-RELATED 188 528 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone3ag1256 640 Gene3D Tetratricopeptide repeat domain 38 187 IPR011990 GO:0005515(InterPro)
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Cone3ag1256 640 Gene3D Tetratricopeptide repeat domain 379 520 IPR011990 GO:0005515(InterPro)
Cone3ag1256 640 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 189 288 - -
Cone3ag1256 640 Pfam E motif 450 512 IPR046848 -
Cone3ag1256 640 NCBIfam pentatricopeptide repeat 335 368 IPR002885 -
Cone3ag1256 640 NCBIfam pentatricopeptide repeat 235 268 IPR002885 -
Cone3ag1256 640 NCBIfam pentatricopeptide repeat 207 235 IPR002885 -
Cone3ag1256 640 NCBIfam pentatricopeptide repeat 137 170 IPR002885 -
Cone3ag1256 640 NCBIfam pentatricopeptide repeat 408 431 IPR002885 -
Cone3ag1256 640 NCBIfam pentatricopeptide repeat 306 331 IPR002885 -
Cone3ag1256 640 SUPERFAMILY TPR-like 114 490 IPR011990 GO:0005515(InterPro)
Cone3ag1256 640 Gene3D Tetratricopeptide repeat domain 283 378 IPR011990 GO:0005515(InterPro)
Cone3ag1256 640 Gene3D Tetratricopeptide repeat domain 188 282 IPR011990 GO:0005515(InterPro)
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 134 IPR002885 -
Cone3ag1256 640 FunFam Pentatricopeptide (PPR) repeat-containing protein 396 559 - -
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 331 IPR002885 -
Cone3ag1256 640 Pfam DYW family of nucleic acid deaminases 548 640 IPR032867 GO:0008270(InterPro)
Cone3ag1256 640 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 39 188 - -
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cone3ag1256 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1256 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0213 Cone-Chr3:1149352 Cone3ag1256 Cone-Chr3:31386880 4.18E-12 dispersed
Cone3ag1256 Cone-Chr3:31386880 Cone9ag1171 Cone-Chr9:8352117 1.87E-171 dispersed
Cone5ag0220 Cone-Chr5:938726 Cone3ag1256 Cone-Chr3:31386880 8.06E-58 dispersed
Cone12ag0441 Cone-Chr12:2630560 Cone3ag1256 Cone-Chr3:31386880 1.66E-54 transposed
Cone10ag1206 Cone-Chr10:8941692 Cone3ag1256 Cone-Chr3:31386880 5.57E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g309 . . . . . . . . . . . . . Car20g00609 . . . . . . . . . . . . . . . . . . . Cone3ag1256 . . . . . . . . . . . . . . . Cmo20g00704 . . . . Cpe16g00356 . . . . . . . . Cla02g01056 . . . . . . . . . Cme11g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003057 1 1 0 0 1 1 2 0 1 2 2 0 1 2 2 2 0 2 1 1 1 1 1 1 1 2 2 0 1 2 34