Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag1257 | ATGTCCGGCTTTGGATCTACCACTCCCGGTTCACTCTACTCCCACAGGCTCCTCGGACAGGGACTCCAGCTACAAAGAGCATCCCAACCACAACTAACCAGTTGCAACAAAGACTTCCAAGAAGACGATGAAGAAAATTCGGGTCCCACTGATGCAGCAACAACCAGCACTCGTAGTACTTCACAAAGCCGTAGGCCCCGGGGCCGTCCTGCAGGCTCAAAGAACAAACCGAAACCGCCAATCATCATAACTCGGGACAACCCAAGTGCGCTAAAATCTCATGTCCTAGAGATATCTTCAAGGTCGGACATATTAGAAGCTATCACAAACTATGCAAGAAGAAGAGGGAGAGGAGTTTGTATCCTTAGTGGAACTGGATATGTCACCAATGTCACCTTGCGCCAACTGGCAGGCCCATCTGCGAGTCTGATTACATTGCCTGGCCGGTTTGAGATTCTGTCTCTGACTGGGAGCGCATTGCCGCCTACTGCTCCACCAGGAGCTGGAGGTCTGACGATCTACCTGGCGGGAGGGCAAGGACAAGTTGTTGGAGGGAATGTTTCCGGTCAATTGACGGCTTCGGGACCCGTAGTACTAATGGCTGCATCGTTTATGAACGCTGTGTATGATAGGCTGCCGCTTGATGATCAGGAGGAGTCGCTTGTGCCAGTCCAACCAGAAGTGTCTCAAACTTCGGAAGTTACAGGCAGTGGTGGTGGTGGTGGCGATGGTGGTGGAAGTAGTGCTAATGGTGGTGGTGGTGGTGGGGTTCCTTTCTATAATTTACGTATGAGCATGGGTAGTACTACTCCTACTCATGGTTTTCCTGGACATGATGCGTTTGGTTGGAGTGGCAGTGCATCAAGGCCTCCATTTTGA | 879 | 51.31 | MSGFGSTTPGSLYSHRLLGQGLQLQRASQPQLTSCNKDFQEDDEENSGPTDAATTSTRSTSQSRRPRGRPAGSKNKPKPPIIITRDNPSALKSHVLEISSRSDILEAITNYARRRGRGVCILSGTGYVTNVTLRQLAGPSASLITLPGRFEILSLTGSALPPTAPPGAGGLTIYLAGGQGQVVGGNVSGQLTASGPVVLMAASFMNAVYDRLPLDDQEESLVPVQPEVSQTSEVTGSGGGGGDGGGSSANGGGGGGVPFYNLRMSMGSTTPTHGFPGHDAFGWSGSASRPPF | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31399475 | 31400353 | + | Conep03aG0176400.1 | Cone3ag1257 | 434716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag1257 | 292 | MobiDBLite | consensus disorder prediction | 23 | 87 | - | - | |
| Cone3ag1257 | 292 | Gene3D | - | 92 | 224 | - | - | |
| Cone3ag1257 | 292 | MobiDBLite | consensus disorder prediction | 49 | 68 | - | - | |
| Cone3ag1257 | 292 | ProSiteProfiles | PPC domain profile profile. | 88 | 227 | IPR005175 | - | |
| Cone3ag1257 | 292 | CDD | DUF296 | 92 | 204 | IPR005175 | - | |
| Cone3ag1257 | 292 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 40 | 291 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
| Cone3ag1257 | 292 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 89 | 220 | - | - | |
| Cone3ag1257 | 292 | PIRSF | ESCAROLA | 8 | 292 | IPR014476 | GO:0003680(InterPro) | |
| Cone3ag1257 | 292 | MobiDBLite | consensus disorder prediction | 223 | 237 | - | - | |
| Cone3ag1257 | 292 | FunFam | AT-hook motif nuclear-localized protein | 91 | 220 | - | - | |
| Cone3ag1257 | 292 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 93 | 205 | IPR005175 | - | |
| Cone3ag1257 | 292 | MobiDBLite | consensus disorder prediction | 220 | 253 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag1257 | Cone-Chr3:31399475 | Cone8ag0353 | Cone-Chr8:2019529 | 3.95E-69 | dispersed | |
| Cone10ag1200 | Cone-Chr10:8859148 | Cone3ag1257 | Cone-Chr3:31399475 | 6.20E-154 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag1257 | - | - | - | 0.0 |