Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1261 ATGGATGATGATGAAAAAAATATCAGGAGCACGATATCGAGAGATCGAAATGGTTCGGGCTCGGCTTCCGATTCGATCGACGAATTTTTCCCTCTCTCAAATTCCAAGCCTCCTCGTCGTCCTCTTCCTAACTCCAGCTCAAACAGATCCTCGCGCGAGTGCATGCCTTCCTCCTTGAATCTAAACATTCGTGAATCGTCTTCTGCCGATTCGGACGAAGCTCCCCTTCAGTTTCTCAAAAGAAGCGCCCCTTCACAACTAAACAAGGACGCAACATCTCAGAAGGATTATAACTTTCCCGAGAAATTCAAGCTTCGTGGAAGCAACGACAACAGAAATGGAAACAGTACTATTAATTGGGAAAATCCTCAATTGAACACTTCACCTCATTCTCCTACTGAATCCGATCATGAAAAGCAGCAGCCTCCACCTGAAGCTGACCAAATGTTCAAGAAAATGAAGGAATCAGGTCTCATCCCTAATGCAGTCGCCATGCTTGATGGTCTCTGTAAAGATGGACTCGTCCAAGAAGCCATGAAACTCTTCGGTCTAATGCGTGGGAAAGGGTTTTGTAAAGCAGAAAAGGTAGATGATGCAATTAGGATTTTCCGGAAAATGCAGAGCAATGGGATTACTCCTAATGCATTTAGCTTTACTGTCTTGATTCAAGGATTGTATAAATGCAACAAATTGGATGATGCTATTGGATTTTGCCTTGAGATGATAGAAGCAGGGCATTCTCCAAATGTGACTACTTTTGTAGGATTGATTGATGGGTTATGCAATGAAAAGGGAGTGGAAGAAGCCAGGAGTATCATTGTTACATTGAGACAGAAGGGGTTTTTTGTTAATAATAAAGCTGTTAGAGAGTACTTAAACAAGAAGGCCCCATTTTCACCATTAGTCTGGGAAGCGATTTTCAGGAAGATATCTTCATCGCAGACATTGTTTTGA 954 42.35 MDDDEKNIRSTISRDRNGSGSASDSIDEFFPLSNSKPPRRPLPNSSSNRSSRECMPSSLNLNIRESSSADSDEAPLQFLKRSAPSQLNKDATSQKDYNFPEKFKLRGSNDNRNGNSTINWENPQLNTSPHSPTESDHEKQQPPPEADQMFKKMKESGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRGKGFCKAEKVDDAIRIFRKMQSNGITPNAFSFTVLIQGLYKCNKLDDAIGFCLEMIEAGHSPNVTTFVGLIDGLCNEKGVEEARSIIVTLRQKGFFVNNKAVREYLNKKAPFSPLVWEAIFRKISSSQTLF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31428657 31429652 + Conep03aG0176800.1 Cone3ag1261 434720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1261 317 Pfam PPR repeat 165 186 IPR002885 -
Cone3ag1261 317 MobiDBLite consensus disorder prediction 109 131 - -
Cone3ag1261 317 Pfam PPR repeat family 188 227 IPR002885 -
Cone3ag1261 317 Gene3D Tetratricopeptide repeat domain 191 299 IPR011990 GO:0005515(InterPro)
Cone3ag1261 317 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 146 287 - -
Cone3ag1261 317 MobiDBLite consensus disorder prediction 39 73 - -
Cone3ag1261 317 Pfam PPR repeat 252 281 IPR002885 -
Cone3ag1261 317 Pfam PPR repeat 144 158 IPR002885 -
Cone3ag1261 317 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Cone3ag1261 317 NCBIfam pentatricopeptide repeat 188 215 IPR002885 -
Cone3ag1261 317 NCBIfam pentatricopeptide repeat 164 190 IPR002885 -
Cone3ag1261 317 NCBIfam pentatricopeptide repeat 216 250 IPR002885 -
Cone3ag1261 317 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Cone3ag1261 317 Gene3D Tetratricopeptide repeat domain 137 190 IPR011990 GO:0005515(InterPro)
Cone3ag1261 317 MobiDBLite consensus disorder prediction 1 145 - -
Cone3ag1261 317 MobiDBLite consensus disorder prediction 13 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1197 Cone-Chr10:8839534 Cone3ag1261 Cone-Chr3:31428657 3.35E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g323 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007786 2 3 2 2 1 0 2 1 1 1 1 0 2 1 1 1 0 2 2 1 1 1 1 1 1 0 1 1 1 1 35