Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1262 ATGGAGGAAACACTAGAAACTTCTAACACCTTCAAATTTGCCGAGAAATATCTGTACCAAAGCAAAAATTGGATGGCAATTCCAGACCCTGAAAAAAGCAGTCCTAGCAAGAAAACCAAGGGCTCCGATTTGGACCAAAAAATTATAACCGAAACCAACATAGCAGAAAGAACAGCAGAGTGGGGACTAGGTATGAAATCGGATGCAGGAAGAGAGAGTTTCAAGGCCTTAATAGGCAACATGACAAGAACATCAGGCAATGGAGATGGAAGCCGGACAAGTTCATTAGAAAGATTTGCTTTGGAATCAACAAGAACATCTGAGGATTCAAATTTTGGATCGGAATCATCAAGAGCAATTCCTAAAGTGTCACAAGAATTGAAGGATGCTTTGTCTAGTTTACAACAAACATTTGTTGTTTCTGATGCTACAAAACCGGACTGTCCTATTGTCTATGCTAGTAGTGGGTTTTTCACTATGGCCGGCTACTCTTCCAAGGATGTTATTGGACGGAACTGTCGATTTCTTCAGGGACCAGGCACGGATGAAGTTGAAGTTGCAAAGATTCGGCATGCAGTGAGAAATGGGAAGAGCTATTGTGGAAGACTATTGAACTATAAGAAGAATGGAACTCCTTTCTGGAATCTTCTAACTGTCACTCCCATTAGAGATGGCAATGGAAAAACCATCAAGTTTATTGGAATGCAGGTTGAGGTCAGTAAATACACTGAAGGAGTGAATGATAAGGAATTGCGTCCAAATGGATTGCCCAAGTCGTTAATCCGCTATGATGCTCGTCAGAAGGAGAAGGCATTAGAATCAATTACAGAAGTAGTCCAGACTTTGAAACATCCAGAATCTCATATCAGTAAGATTGAAGAAGAGCTCGAAAAATTCAACCTCAAAGATATTCTTCCCAAGTCTACTGAATCTCCAACACCTGACCCTTCTAGCAAAATCTCATATGAGAACATAGAAAAGAAATCGAGACTTTCATCTCGAATTTCTTCATTGGGGTCGAAAAGAATGACATTGAGTTTTGGAAGCAAGCAAGAGCAAGTTCCAACCATTGAACCGGAAATTTTGATGATCGAGGACATAGAAGAGCGTTCGGATAGTTGGGAGAGTTCAGATAGAGAAACAGATATAAGACAAGGGATAGATTTAGCAACAACATTGGAAAGAATTGAGAAAAATTTTGTGATTTCTGATCCTAGACTTCCAGACAACCCAATTATCTTTGCATCTGATAGCTTTCTTGAATTGACAGAATATACCCGGGAAGAGATTTTGGGAAGAAATTGCAGGTTTCTTCAAGGACCTGAAACTGATCAAGCAACAGTACAGAAGATAAGAGATGCTATCAAAGAGCAAAGAGAGATCACTGTTCAGTTGATTAACTATACCAAGAGTGGTAAAAAGTTCTGGAATTTGTTCCACTTGCAACCTATGAAGGATCAAAAGGGTGAGCTTCAATACTTCATTGGTGTGCAACTAGATGGAACTGGAAGTGATCAGCCAGTGAAACCTCTACTAGAGGGACTTACAGAAGAAGTAGAAGAAGAAAGTGCTAAACTGGTGAAGACTACTGCAGAAAATGTCGACGAGGCTGTTCGGGAACTTCCTGATGCCAACTTGAGGCCAGAAGATTTGTGGGCAATTCATTCTAAGCCTGTTTTTCCAAAACCTCACAAGAAGGAAAGCTCTTCTTGGAAAGCAATACAAAAAATTACTGCCCAGGGTGAAACAATTGGTCTCAATCATTTTAAACCCCTCAAACCATTGGGTTATGGAGACACCGGAAGTGTGCATTTAGTGGAACTGATAGGTACAGGTGAACTTTATGCTATGAAGGCAATGGAGAAGTCCGTAATGTTGAACCGTAACAAGGTTCATCGAGCATGCATCGAAAGGGAAATCATTTCACTTTTGGATCATCCTTTTCTTCCAAGTCTGTACACTTCGTTTCAGACTCCTACACATCTTTTTCTGGTAACCGAATTTTGTCATGGTGGAGAGCTGTTTGCATTGCTTGATAGACAACCAATGAAATTATTTAACGAGGAATCTTCAAGGTTCTATGCTGCAGAAGTTGTCGTTGGGTTGGAATATCTTCACTGTTTAGGAATCATTTACCGTGACTTGAAACCTGAAAACATTCTACTACAGAAGGATGGACACGTCGTATTAACAGATTTCGATTTGTCATTTTTGACATCCTGTAAACCACAGGCAGTTCCTAAGAATAGGAGGAGATCTAGGATTCAACCACCTCCTATATTTGTTGGCGAACCATTTACACAATCAAATTCCTTTGTTGGAACTGAAGAATACATCGCTCCTGAGATTATTACAGGTGAGGGGCATAGTAGCTCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTTTATGGTAGAACGCCTTTTAGGGGAAAGAACAGGCGGAAGACCTTTGCCAACATCTTGTACAAAGATCTCACCTTTCCATCTAGCATTCCGGCAAGTCTAGCAGCAAGGCGGCTAATAAATGGTTTGCTGCAAAGAGACCCTACCCAGCGTTTAGGGTTCAAGACCGGGGCCAGCGAAATCAAACAACATCCTTTTTTCCACGGCATTAATTGGCCTCTAATCCGGTGCATGACCCCACCCCTGTTGGAGGTACCTCTTCAATTGATCGAAAAGGATCCAACAGCCAATGATATAGACTGGGAAGATGATGGTGTGCTTGTTCATTCTATAGACTTGGACTTCTTCTAA 2766 41.0 MEETLETSNTFKFAEKYLYQSKNWMAIPDPEKSSPSKKTKGSDLDQKIITETNIAERTAEWGLGMKSDAGRESFKALIGNMTRTSGNGDGSRTSSLERFALESTRTSEDSNFGSESSRAIPKVSQELKDALSSLQQTFVVSDATKPDCPIVYASSGFFTMAGYSSKDVIGRNCRFLQGPGTDEVEVAKIRHAVRNGKSYCGRLLNYKKNGTPFWNLLTVTPIRDGNGKTIKFIGMQVEVSKYTEGVNDKELRPNGLPKSLIRYDARQKEKALESITEVVQTLKHPESHISKIEEELEKFNLKDILPKSTESPTPDPSSKISYENIEKKSRLSSRISSLGSKRMTLSFGSKQEQVPTIEPEILMIEDIEERSDSWESSDRETDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQKIRDAIKEQREITVQLINYTKSGKKFWNLFHLQPMKDQKGELQYFIGVQLDGTGSDQPVKPLLEGLTEEVEEESAKLVKTTAENVDEAVRELPDANLRPEDLWAIHSKPVFPKPHKKESSSWKAIQKITAQGETIGLNHFKPLKPLGYGDTGSVHLVELIGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPSLYTSFQTPTHLFLVTEFCHGGELFALLDRQPMKLFNEESSRFYAAEVVVGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFLTSCKPQAVPKNRRRSRIQPPPIFVGEPFTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRRKTFANILYKDLTFPSSIPASLAARRLINGLLQRDPTQRLGFKTGASEIKQHPFFHGINWPLIRCMTPPLLEVPLQLIEKDPTANDIDWEDDGVLVHSIDLDFF 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31437606 31445827 - Conep03aG0176900.1 Cone3ag1262 434721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1262 921 Gene3D Transferase(Phosphotransferase) domain 1 673 886 - -
Cone3ag1262 921 MobiDBLite consensus disorder prediction 26 47 - -
Cone3ag1262 921 ProSiteProfiles PAS repeat profile. 123 196 IPR000014 -
Cone3ag1262 921 Gene3D Phosphorylase Kinase; domain 1 588 672 - -
Cone3ag1262 921 SMART serkin_6 589 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1262 921 FunFam Putative LOV domain-containing protein 137 293 - -
Cone3ag1262 921 CDD STKc_phototropin_like 588 896 - -
Cone3ag1262 921 CDD PAS 150 239 IPR000014 -
Cone3ag1262 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1262 921 SUPERFAMILY PYP-like sensor domain (PAS domain) 404 500 IPR035965 -
Cone3ag1262 921 ProSiteProfiles PAS repeat profile. 385 458 IPR000014 -
Cone3ag1262 921 SUPERFAMILY PYP-like sensor domain (PAS domain) 144 236 IPR035965 -
Cone3ag1262 921 Coils Coil 512 532 - -
Cone3ag1262 921 Gene3D PAS domain 374 541 - -
Cone3ag1262 921 MobiDBLite consensus disorder prediction 303 324 - -
Cone3ag1262 921 SUPERFAMILY Protein kinase-like (PK-like) 564 903 IPR011009 -
Cone3ag1262 921 CDD PAS 408 500 IPR000014 -
Cone3ag1262 921 SMART pac_2 200 242 IPR001610 -
Cone3ag1262 921 SMART pac_2 462 504 IPR001610 -
Cone3ag1262 921 FunFam Putative LOV domain-containing protein 673 884 - -
Cone3ag1262 921 ProSiteProfiles PAC domain profile. 459 513 IPR000700 -
Cone3ag1262 921 FunFam LOV domain-containing protein 374 541 - -
Cone3ag1262 921 Pfam PAS domain 408 500 IPR000014 -
Cone3ag1262 921 Pfam PAS domain 144 240 IPR000014 -
Cone3ag1262 921 MobiDBLite consensus disorder prediction 306 320 - -
Cone3ag1262 921 ProSiteProfiles Protein kinase domain profile. 589 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1262 921 PANTHER FLIPPASE KINASE 1-RELATED 538 890 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone3ag1262 921 Pfam Protein kinase domain 592 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1262 921 ProSiteProfiles PAC domain profile. 197 251 IPR000700 -
Cone3ag1262 921 SMART pas_2 387 456 IPR000014 -
Cone3ag1262 921 SMART pas_2 125 194 IPR000014 -
Cone3ag1262 921 NCBIfam PAS domain S-box protein 411 500 IPR000014 -
Cone3ag1262 921 NCBIfam PAS domain S-box protein 149 240 IPR000014 -
Cone3ag1262 921 ProSitePatterns Protein kinases ATP-binding region signature. 595 618 IPR017441 GO:0005524(InterPro)
Cone3ag1262 921 Gene3D PAS domain 137 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1025 Cone-Chr11:8118512 Cone3ag1262 Cone-Chr3:31437606 8.54E-54 dispersed
Cone3ag1262 Cone-Chr3:31437606 Cone5ag1195 Cone-Chr5:5398973 0 dispersed
Cone10ag1196 Cone-Chr10:8825735 Cone3ag1262 Cone-Chr3:31437606 0 wgd
Cone12ag1283 Cone-Chr12:9795258 Cone3ag1262 Cone-Chr3:31437606 0 wgd
Cone3ag1262 Cone-Chr3:31437606 Cone5ag1793 Cone-Chr5:12725115 6.52E-110 wgd
Cone3ag1262 Cone-Chr3:31437606 Cone8ag1349 Cone-Chr8:10827919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82700 PF12624 Chorein_N 1.90E-13 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1262 K20715 - rcu:8285357 1311.21