Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1272 ATGGGCCTTTCAAGTCTCCCAGCCCCATCTGAAGGGGTCCTCTGTGTCCTCCTAGTAAACACTGCCCTCTCCATTTCCATATTCAAAAGCATAGTCCGGTCCATTCTTCATGTTATCGGAATCCGCCTCTCTTCATCTTCTTCATCTTCATCTACACCATCATCTATAGATTCAATGGAAACCACTCCAATTTCCACTGACTTCCATAGTACTAGTCATTCTGATGGATTCACAGAGGAATTCCGGACACGGGTCCCATCAATCCGGTTTGATAAAGTGTGTAGCTGTAAAAAACCGGACCATGATTGCTCGGTTTGCTTGACCCAATTTGAGCCTGAATCGGAGATAAACCGTTTGTCTTGTGGACATGTGTTCCATAAGGTATGCTTGGAGAAATGGCTTGATTGGAACATTACTTGTCCTCTCTGTAGAACTCCTTTGATACCCGAAGAAGAGACCTCTTGCTTTTGGTGA 474 44.73 MGLSSLPAPSEGVLCVLLVNTALSISIFKSIVRSILHVIGIRLSSSSSSSSTPSSIDSMETTPISTDFHSTSHSDGFTEEFRTRVPSIRFDKVCSCKKPDHDCSVCLTQFEPESEINRLSCGHVFHKVCLEKWLDWNITCPLCRTPLIPEEETSCFW 157
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 31560196 31562020 + Conep03aG0177900.1 Cone3ag1272 434731
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1272 157 PANTHER - 1 157 IPR044249 -
Cone3ag1272 157 Pfam Ring finger domain 102 144 IPR001841 -
Cone3ag1272 157 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Cone3ag1272 157 SMART ring_2 103 143 IPR001841 -
Cone3ag1272 157 SUPERFAMILY RING/U-box 98 149 - -
Cone3ag1272 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 149 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0876 Cone-Chr13:7788979 Cone3ag1272 Cone-Chr3:31560196 1.12E-13 dispersed
Cone14ag0373 Cone-Chr14:1746923 Cone3ag1272 Cone-Chr3:31560196 1.84E-15 dispersed
Cone15ag0411 Cone-Chr15:1932700 Cone3ag1272 Cone-Chr3:31560196 1.10E-16 dispersed
Cone18ag1070 Cone-Chr18:7865316 Cone3ag1272 Cone-Chr3:31560196 6.77E-15 dispersed
Cone10ag1190 Cone-Chr10:8785417 Cone3ag1272 Cone-Chr3:31560196 3.84E-99 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1272 K16285 - gmx:100786803 236.113