Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag1272 | ATGGGCCTTTCAAGTCTCCCAGCCCCATCTGAAGGGGTCCTCTGTGTCCTCCTAGTAAACACTGCCCTCTCCATTTCCATATTCAAAAGCATAGTCCGGTCCATTCTTCATGTTATCGGAATCCGCCTCTCTTCATCTTCTTCATCTTCATCTACACCATCATCTATAGATTCAATGGAAACCACTCCAATTTCCACTGACTTCCATAGTACTAGTCATTCTGATGGATTCACAGAGGAATTCCGGACACGGGTCCCATCAATCCGGTTTGATAAAGTGTGTAGCTGTAAAAAACCGGACCATGATTGCTCGGTTTGCTTGACCCAATTTGAGCCTGAATCGGAGATAAACCGTTTGTCTTGTGGACATGTGTTCCATAAGGTATGCTTGGAGAAATGGCTTGATTGGAACATTACTTGTCCTCTCTGTAGAACTCCTTTGATACCCGAAGAAGAGACCTCTTGCTTTTGGTGA | 474 | 44.73 | MGLSSLPAPSEGVLCVLLVNTALSISIFKSIVRSILHVIGIRLSSSSSSSSTPSSIDSMETTPISTDFHSTSHSDGFTEEFRTRVPSIRFDKVCSCKKPDHDCSVCLTQFEPESEINRLSCGHVFHKVCLEKWLDWNITCPLCRTPLIPEEETSCFW | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31560196 | 31562020 | + | Conep03aG0177900.1 | Cone3ag1272 | 434731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag1272 | 157 | PANTHER | - | 1 | 157 | IPR044249 | - | |
| Cone3ag1272 | 157 | Pfam | Ring finger domain | 102 | 144 | IPR001841 | - | |
| Cone3ag1272 | 157 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 144 | IPR001841 | - | |
| Cone3ag1272 | 157 | SMART | ring_2 | 103 | 143 | IPR001841 | - | |
| Cone3ag1272 | 157 | SUPERFAMILY | RING/U-box | 98 | 149 | - | - | |
| Cone3ag1272 | 157 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 149 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0876 | Cone-Chr13:7788979 | Cone3ag1272 | Cone-Chr3:31560196 | 1.12E-13 | dispersed | |
| Cone14ag0373 | Cone-Chr14:1746923 | Cone3ag1272 | Cone-Chr3:31560196 | 1.84E-15 | dispersed | |
| Cone15ag0411 | Cone-Chr15:1932700 | Cone3ag1272 | Cone-Chr3:31560196 | 1.10E-16 | dispersed | |
| Cone18ag1070 | Cone-Chr18:7865316 | Cone3ag1272 | Cone-Chr3:31560196 | 6.77E-15 | dispersed | |
| Cone10ag1190 | Cone-Chr10:8785417 | Cone3ag1272 | Cone-Chr3:31560196 | 3.84E-99 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag1272 | K16285 | - | gmx:100786803 | 236.113 |