Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1294 ATGCAAGCTTCAAAGCAATCCAGACGCTCTTCCATGCCCAAGAAACTATGTTATAAGCCTATGAACCAGCCTGAGGTCTTATGCTTTCCTCCGCTTCAAAATTACCAACTATGCTCTGGTAGTTCCATTGCAATTTTCGACGGAAAATACTGCACTCTAGAGTCCTCCTCCAGAAACGGAGAATATTCCGTTAATTACTGGAATATTCCATCAAGTCTCACCTTCTCTCCCAGTTGGAGCTCCATATCACAACAATGCTCGGATAACAGTAAAAAAAGTAATAATAATAATACTAATAATAATACATGTGGCTCTCCTATCAGTGGCTCCTGTATAACATATGAAGTCAATGACTTGCGCTACAAGTTACGGGAACTGGAAACCGCAATGTTCGGTGTGGACCCTGATTTTCTCGATGAGTGTTATGACAGTAATGAGGGCTCTAAACAAATAATGGAAGCAGTCTCTAAAGGGGACTTGAAACGGGTTCTAATTGCTTGTGCTCGAGCAGTATCTGATGATGATCAATCGATAGCACAATGGCTGATCAACGAATTACGAAAATTGGTCTCAGTTTCCGGAGAACCGATCCAACGGCTGGGAGCGTACATGCTAGAAGGACTAGTGGCTAAGATTTCGTCGTCTGGTAGTTGCATCTACAAAGCCCTAAGATGCAAAGAACCAGCAAGTAGCTCAGACATACTTTCTTACATGCACATCCTTTACGAGGTGTGTCCGTATTTCAAATTCGGTTACATGTCGGCCAATGGCGCAATAGCCGAAGCCATGAAGGACGAAAACTGGGTCCACATAATCGATTTCCAAATTGCTCAGGGGAGTCAATGGATCACCCTGATCCAAGCCTTTGCGGCCCGGCCTGGTGGGCCCCCGCATATCCGTATAACGGGGATCGACGATTCGGTGTCTGCTAATGCTCGTGGAGGTGGACTCAACCTCATTGGAAAACGGCTAGCACAACTAGCCAGGTCTTTTAAAGTTCCATTCGAATTCCATGCGGCTGCAATGTTTGGTTGTGAGGTTGAGCCAAAAGACCTCGGGGTTCGACCCGGTGAAGCTCTTGCGGTTAATTTTCCGTTTATGCTTCATCACATGCCAGATGAAAGTGTAACCACCATGAACCATAGGGACCGCCTTTTACGTTTGGTCAAAGGATTGGCTCCAAAGGTGGTTACTCTTGTTGAGCAAGAGTCAAATACAAATACGGCCGCATTTTATTCGCGGTTTTTGGAGACGTTGGATTACTACAAGGCGATGTTTGAGTCGATTGATGCGACTCTTCCTAGGGAGCATAGGGAGAGGATCAATGTGGAGCAACATTGTCTAGCAAGGGAAGTGGTTAACATAATAGCTTGTGAAGGGGGGGAGAGAGTGGAACGACACGAGCTTTTGGGGAAGTGGAGGTTGAGGTTTAGTATGGCTGGGTTTAGTCCATACCCGTTAAGCTCGTTGGTGAATGCTACAATCAAGAGGTTGTTGCAGAATTATAGCGATAAGTATCGGCTTGAAGAGAGGGAAGGGGCTCTTTATCTTGGATGGATGAATAGGGATTTGGTTGCTTCTTGTGCTTGGAAGTGCGAATGA 1602 45.63 MQASKQSRRSSMPKKLCYKPMNQPEVLCFPPLQNYQLCSGSSIAIFDGKYCTLESSSRNGEYSVNYWNIPSSLTFSPSWSSISQQCSDNSKKSNNNNTNNNTCGSPISGSCITYEVNDLRYKLRELETAMFGVDPDFLDECYDSNEGSKQIMEAVSKGDLKRVLIACARAVSDDDQSIAQWLINELRKLVSVSGEPIQRLGAYMLEGLVAKISSSGSCIYKALRCKEPASSSDILSYMHILYEVCPYFKFGYMSANGAIAEAMKDENWVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSVSANARGGGLNLIGKRLAQLARSFKVPFEFHAAAMFGCEVEPKDLGVRPGEALAVNFPFMLHHMPDESVTTMNHRDRLLRLVKGLAPKVVTLVEQESNTNTAAFYSRFLETLDYYKAMFESIDATLPREHRERINVEQHCLAREVVNIIACEGGERVERHELLGKWRLRFSMAGFSPYPLSSLVNATIKRLLQNYSDKYRLEEREGALYLGWMNRDLVASCAWKCE 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31806914 31809163 + Conep03aG0180200.1 Cone3ag1294 434753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1294 533 ProSiteProfiles GRAS family profile. 151 531 IPR005202 -
Cone3ag1294 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 112 530 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone3ag1294 533 Pfam GRAS domain family 160 531 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1207 Cone-Chr14:9818414 Cone3ag1294 Cone-Chr3:31806914 7.18E-184 dispersed
Cone15ag1224 Cone-Chr15:9727275 Cone3ag1294 Cone-Chr3:31806914 1.36E-77 dispersed
Cone3ag1294 Cone-Chr3:31806914 Cone6ag0094 Cone-Chr6:455288 4.52E-167 dispersed
Cone1ag0045 Cone-Chr1:251397 Cone3ag1294 Cone-Chr3:31806914 2.50E-173 wgd
Cone10ag1246 Cone-Chr10:9461020 Cone3ag1294 Cone-Chr3:31806914 0 wgd
Cone3ag1294 Cone-Chr3:31806914 Cone5ag1816 Cone-Chr5:12832470 1.07E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45851 PF00400 WD40 0.00034 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1294 K27748 - vvi:100261403 742.651