Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1295 ATGCCTGCTACTCAAAATCCTTTTCAAGATTGCTCAGATGGTGAGCCATTTGTCGAGTTTGATCTAACTGGCCGATTCGGACGGTATGATGATCTTCTTGGAATAGGAGCTGTAAAAAAAGTTTATCGAGCCTTTGATCTAGAGGAAGGAATGGAGGTGGCTTGGAACCAAGTCCGGTTAAGATGCTTCAATGGAGATCCAATTCTCATTAACCGCCTTCATTCAGAGGTTAAGCTTCTAAGTACACTGAAAAACAGAAATATCATCGTCTGCTACAGTGTTTGGAAGGATGATGAGCATAATACGATAAACTTCATAACTGAGGTTTGTACTTCTGGAAACTTGAGAGAGTACCAGAAAAAGCACCGCCATGTTTCTCTTAAGGCCTTGAAAAAATGGTCCAAACAGGTACTTGAGGGACTTGAATTTCTCCATACCCATGAGCCCTGTATTATTCACAGAGATCTCAATTGCAGCAACATCTTCATCAATGGGAACATTGGCCAGGTGAAAATTGGTGATCTGGGCTTTGCAGCAATAGTGGGGAAGAGTCACTCAGCACATTCTGTGTTAGGAACGCCCGAGTATATGGCACCAGAGCTTTATGAGGAAGATTATACCGAAATGGTGGATATATATTCTTTCGGGTTGTGTTTGCTTGAGATGGTTACAAGGGAGATACCTTACAGTGAATGCGATAATGTAGCCAAGATATATAAGAAGGTGACAACTGGTATAAAGCCTCACTCCTTAAACAAGGTGACTGATTCTGAAGTTAGGGCTTTTATCGAAAAGTGTATTGGCCAGCCTAGGGCTAGACCCTCTGCCTCTGATCTTCTCAAAGACCCATTTTTCTCCGAAATCAGTGATCAAGACGCTGGAAATAATTAG 891 42.09 MPATQNPFQDCSDGEPFVEFDLTGRFGRYDDLLGIGAVKKVYRAFDLEEGMEVAWNQVRLRCFNGDPILINRLHSEVKLLSTLKNRNIIVCYSVWKDDEHNTINFITEVCTSGNLREYQKKHRHVSLKALKKWSKQVLEGLEFLHTHEPCIIHRDLNCSNIFINGNIGQVKIGDLGFAAIVGKSHSAHSVLGTPEYMAPELYEEDYTEMVDIYSFGLCLLEMVTREIPYSECDNVAKIYKKVTTGIKPHSLNKVTDSEVRAFIEKCIGQPRARPSASDLLKDPFFSEISDQDAGNN 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31818478 31820353 + Conep03aG0180300.1 Cone3ag1295 434754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1295 296 Gene3D Phosphorylase Kinase; domain 1 12 108 - -
Cone3ag1295 296 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Cone3ag1295 296 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1295 296 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Cone3ag1295 296 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Cone3ag1295 296 SUPERFAMILY Protein kinase-like (PK-like) 23 285 IPR011009 -
Cone3ag1295 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone3ag1295 296 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1205 Cone-Chr14:9809900 Cone3ag1295 Cone-Chr3:31818478 6.52E-139 dispersed
Cone3ag1295 Cone-Chr3:31818478 Cone6ag0029 Cone-Chr6:182398 1.98E-164 dispersed
Cone3ag1295 Cone-Chr3:31818478 Cone15ag1222 Cone-Chr15:9719898 2.15E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82701 PF00924 MS_channel 2.40E-18 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1295 K08867 - csv:101222153 508.449