Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1297 ATGAATACAAAACCAAGCTTAAGTTCTCTGTTTTTGACATGTACTCTGTTTTTCACACTCTGTTTCCCATCCTCTGCTCAAACCTGCCAAAGCCACACTCTATCCACCTCAAACGCCTACACCACATGCGTAGATCTTCCCGTCCTAAACTCATTCCTCCATTGGACCTACGATCAAGCTACCGGCTCAGTCAAGATCGCGTTTAGACGACCTCAAACCACAACAAGCACATGGATTGCTTGGGCCATAAACCCACAAGGCCAGAGAATGATTGGGTCTCAAGCCCTTGTCGCGTACCAGAATTCAAGTGGGGGCATGAGGGTTTTTACTTCTCCAATCACGGCATATAGTTTGTCGGAGGGGACTTTGAGTTTTGGCGTGACCGATTTGAACGCGACTTATGTGAATAGTGAGATGACAATAACGGCTACTCTGCAACTTGGTACTCAGTCTACTGTGACTCAAGTATGGCAGGAGGGTCCTTTGAGTGGAGATAATCCTAGTTCTCATGTTACTACTGGTGATAATGCTAACTCGATGGGTACTTTGGATTTGCTTTCTGGTCAAGCTGTTGCTGGTGGAGGTGGTTCTAGTTCGAGGGCTAGACGGAGGAATGTTCATGGAGTGCTAAATGCAGTAAGTTGGGGAACCTTATTGCCTATAGGAGCCATGCTTGCTAGGTATTTGAGAGTATTCAAAGCAGCAGATCCAGCATGGTTTTACCTTCACATAGCATGCCAGTCCTCTGCTTATATTATTGGTGTTGCTGGTTGGGGCACTGGTCTTAAGCTTGGTAGTGATTCTGTTGGTATTCAATATGATTCTCATAGGAACATTGGCATCACACTCTTCGCCCTCGGCACGCTTCAGGTGTTTGCTCTACTTTTAAGGCCAAACAAGGATCATAAATACAGACTCTATTGGAACATATACCACCACGCAATCGGATACACAGTTATCATCCTTAGCATCGTCAATATCTTTAAGGGTTTCGATATTTTGGATCCTGCGAAGAAGTGGAAGAAAATTTATACCGGAATTATCATCTTCTTGGGCATCGTTGCTCTTATTTTGGAAGCTGTAACTTGGTTCATAGTTATAAAGAGAAAGAAGGCCAACTCCAACAAGTTCTCTCACTCCGCTAATGGTGCTAATGGAGTTCAGAGCTATGCTGCCTGA 1179 44.61 MNTKPSLSSLFLTCTLFFTLCFPSSAQTCQSHTLSTSNAYTTCVDLPVLNSFLHWTYDQATGSVKIAFRRPQTTTSTWIAWAINPQGQRMIGSQALVAYQNSSGGMRVFTSPITAYSLSEGTLSFGVTDLNATYVNSEMTITATLQLGTQSTVTQVWQEGPLSGDNPSSHVTTGDNANSMGTLDLLSGQAVAGGGGSSSRARRRNVHGVLNAVSWGTLLPIGAMLARYLRVFKAADPAWFYLHIACQSSAYIIGVAGWGTGLKLGSDSVGIQYDSHRNIGITLFALGTLQVFALLLRPNKDHKYRLYWNIYHHAIGYTVIILSIVNIFKGFDILDPAKKWKKIYTGIIIFLGIVALILEAVTWFIVIKRKKANSNKFSHSANGANGVQSYAA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31855461 31857916 + Conep03aG0180500.1 Cone3ag1297 434756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1297 392 Pfam Eukaryotic cytochrome b561 207 331 IPR006593 -
Cone3ag1297 392 Pfam Protein of unknown function (DUF568) 90 185 IPR045265 -
Cone3ag1297 392 CDD DOMON_CIL1_like 40 187 IPR045265 -
Cone3ag1297 392 ProSiteProfiles Cytochrome b561 domain profile. 171 367 IPR006593 -
Cone3ag1297 392 CDD Cyt_b561_FRRS1_like 177 360 - -
Cone3ag1297 392 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 9 371 - -
Cone3ag1297 392 PIRSF UCP037471 3 391 IPR017214 -
Cone3ag1297 392 Gene3D - 185 378 - -
Cone3ag1297 392 ProSiteProfiles DOMON domain profile. 49 174 IPR005018 -
Cone3ag1297 392 FunFam Cytochrome b561 and DOMON domain-containing protein 186 375 - -
Cone3ag1297 392 SMART 561_7 206 331 IPR006593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0729 Cone-Chr20:5002031 Cone3ag1297 Cone-Chr3:31855461 9.65E-91 dispersed
Cone3ag1297 Cone-Chr3:31855461 Cone7ag0917 Cone-Chr7:7202922 2.23E-130 dispersed
Cone10ag1249 Cone-Chr10:9487226 Cone3ag1297 Cone-Chr3:31855461 1.18E-242 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1297 Cone10ag1249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002015 1 3 0 1 0 2 0 2 2 2 2 2 5 2 2 4 2 2 4 2 2 4 0 2 2 2 2 5 5 2 66