Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1311 ATGCTTCTTCCTCCTCCTCCTTCTCCTTCTCCTCCACTGTTTCTGTTCTTCCTCCTCCTCTTCTTTTCAACTATTGTTGTAATAACCTCTCTTAACCAGGAAGGTCTGTACCTTCAGCGAGTCAGACTCGATCTTTCCGACCCAACTAACTCACTTTCCTCTTGGAATGCGAGAGATGACACTCCCTGCTATTGGTCCGGCGTTTCCTGTGACTCGGCGACTCAGCGAGTCATCTCAGTCGACCTTTCCAACTCGCAACTCGGTGGCCCTTTTCCAACCTTCTTTTGCCGCCTCCCTTCTCTTTCTTCCCTCTCTCTCTTCAACAACGCCATCAACTCCACTCTCGCAGCTGATATCGCCACGTGTCAAAATCTCCAGGTTCTTGATCTTTCTGAGAATCTCATTGTGGGTCCCATCCCTGGAGCCTTGTCCCAAATCGCTACTCTCCGGCGACTAGATCTCTCCGGGAACAACTTTTCCGGCGAGATTCCGGTGAGATTCGGCGAGTTTCAAAGACTCGAGTATCTTAATCTTGTTGAGAATCTTCTTAATGGAACAATCCCTGCTTCTCTTGGAAACATTTCGAGCCTGAAAGAGCTCCAACTCGCTTACAACCCGTTGAGTTCGAGTCGGATTCCTAGTGATCTCGGCAATTTGACGAACCTCGAGTTTCTCTGGCTCAGTAATTGTAATCTAATAGGGCAAATCCCGGCGAGTCTAGGCAACTTGAGTCGGCTCAAAAGCCTCGACTTATCCACAAACAAACTTAGCGGGTCGATACCAAGTTCACTCACTCAGATGAAAAGTCTAGTCCAAGTCGAGCTCTTCCACAATTCACTATCCGGTGAGTTTCCACCATTAATGTCGAACTTAACCTCATTGCGTCGATTCGACTCGTCCATGAACGAGTTCGCAGGAATGATTTCAGAAGATTTATGCGCGTTACCCCTCGAATCCTTAAATCTATACGATAATCGATTTGAAGGGCTGTTGCCGCCGAGCATAGCTAACTCCCCAAATCTATACGAGCTCAGATTATTCAACAACAAACTCAGCGGGTCATTACCAAGTCAACTCGGCCATAACTCGCCGTTGCAGTGGCTCGACTTTTCATATAACGGGTTCTCCGGAGAAATCCCAGAATTCTTGTGCTCGAGGGGAGAACTACAAGGTCTTGTGTTGATGTACAATTCATTGTCTGGAAAAATCCCGGAAAGTCTCGGAAAATGCAGTTCTTTGATCCGGGTTCGGTTGAGAAACAATGAGCTTTCAGGTACAGTGCCTGAAGAATTCTGGGGGTTACCTAAACTCTCTTTACTTGATCTTGTCAAAAATTCGTTCTCTGGATCTATTTCTAGTAAGATCAGTTCTGCTCAAAATCTCTCAAGTTTGTTAATTTCAGATAACCAAATTTCCGGGTCCATTCCAGACGAAATTGGGTCTTTAATCAATCTGTTTGAACTTTCCGGTAATGATAACAATTTCAGCGGAAATATTCCAGAAAGTTTGGGAAATTTGAGTCAATTAGGTAAACTTGATCTTAATAACAATGAAATATCAGGAGAGCTACCTCGGACGATTCAAAATCTGAAGAAGCTAAACGAGCTTTATTTAGCAAACAATAAGCTGTCTGGAAAAATTCCAAAAGAAATCGGAAGCTTAACCGTGCTTATTTATCTTGATCTTTCCAGTAATCGACTTAGTGGAAACATCCCCCTTGAATTACAGAATTTGAAGCTGAATTTTGTGAATTTGTCAAGCAATCTTTTCACGGGTCAAATCCCTCCTCTTTATGCCGAACAGAGTTATAAAGCCAGCTTTTTGGACAACCCGGGTTTGTGTGGAGACATTCCAGGTCTTTGTCCTAACCTTGGAAAAACAAAAAACAAGTTTTACTTTTGGATACTTTGGTCCATTTTCATACTTGCCGGAGTTGTTTTGTTTGCTGGGATTGTTTGGTTTTATTGGAAATATAGAAATTATAAGAACAAGAAAGAAAATTCAGCCTTGTCTAAATGGAGATCATTCCATAAAGTTGAATTCAGTGGAAGTGAAATCATAGGATGCCTGAAAGAAGATAATGTTATAGGAGAAGGAGCTTCCGGAAAGGTTTATAAGGTGGTTCTAAGTAATGGTGATATAGTGGCAGTGAAGAAACTATGGGAAGTTGCAAAAAATGAAAGTAGTTTTAATTCGGAGAAAGATGGGTTTGAGGCTGAGGTAGAGACGCTAGGGAAGATCCGGCATAAGAATATTGTGAGGTTGTGGTGTTGCTGCGATGCTGGGGATAACTGTAAGCTCTTGGTTTATGAATATATGCCTAACGGAAGCTTAGGTGATCTGTTACATGGCGGGAAATCTGGGCTGTTGGATTGGCCGGTTAGGTATAAGATAGCTTTTGATGCCGCTGAGGGGCTTTCTTATTTGCATCATGATTGCGTTCCTCCTGTCGTTCACAGAGATATCAAATCGAACAATATTTTGTTAGATGCAGATTTTGGAGCTAGAGTTTCAGATTTTGGGGTTGCTAAGTTTTTCAAAGGGAGTAATGGGGTTGAATCCATGTCCGTTATTGCCGGTTCTTGTGGCTATATTGCTCCAGAATATGCTTATACTCTTCGGGTGAACGAAAAGAGTGACATCTATAGCTTTGGAGTGGTCATGCTAGAACTAGTGACAGGCCGGCGACCAATAGATCCCGAATTTGTCTGGAAAGATTTGGTTAAGTGGGTCCACACAACCTTGGACCAGAAAGGACAGGGCCATGTAATCGATCCAAAACTCGACTCGAGCTACAAGGAAGAGATAGTTAGAGTCCTAAACGTAGCTTTGATTTGCACTAGCACGCTCCCTGTTAACCGACCCTCAATGAGAACTGTGGTGAAATTGTTGCAAGATGACTAG 2904 43.18 MLLPPPPSPSPPLFLFFLLLFFSTIVVITSLNQEGLYLQRVRLDLSDPTNSLSSWNARDDTPCYWSGVSCDSATQRVISVDLSNSQLGGPFPTFFCRLPSLSSLSLFNNAINSTLAADIATCQNLQVLDLSENLIVGPIPGALSQIATLRRLDLSGNNFSGEIPVRFGEFQRLEYLNLVENLLNGTIPASLGNISSLKELQLAYNPLSSSRIPSDLGNLTNLEFLWLSNCNLIGQIPASLGNLSRLKSLDLSTNKLSGSIPSSLTQMKSLVQVELFHNSLSGEFPPLMSNLTSLRRFDSSMNEFAGMISEDLCALPLESLNLYDNRFEGLLPPSIANSPNLYELRLFNNKLSGSLPSQLGHNSPLQWLDFSYNGFSGEIPEFLCSRGELQGLVLMYNSLSGKIPESLGKCSSLIRVRLRNNELSGTVPEEFWGLPKLSLLDLVKNSFSGSISSKISSAQNLSSLLISDNQISGSIPDEIGSLINLFELSGNDNNFSGNIPESLGNLSQLGKLDLNNNEISGELPRTIQNLKKLNELYLANNKLSGKIPKEIGSLTVLIYLDLSSNRLSGNIPLELQNLKLNFVNLSSNLFTGQIPPLYAEQSYKASFLDNPGLCGDIPGLCPNLGKTKNKFYFWILWSIFILAGVVLFAGIVWFYWKYRNYKNKKENSALSKWRSFHKVEFSGSEIIGCLKEDNVIGEGASGKVYKVVLSNGDIVAVKKLWEVAKNESSFNSEKDGFEAEVETLGKIRHKNIVRLWCCCDAGDNCKLLVYEYMPNGSLGDLLHGGKSGLLDWPVRYKIAFDAAEGLSYLHHDCVPPVVHRDIKSNNILLDADFGARVSDFGVAKFFKGSNGVESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVMLELVTGRRPIDPEFVWKDLVKWVHTTLDQKGQGHVIDPKLDSSYKEEIVRVLNVALICTSTLPVNRPSMRTVVKLLQDD 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32033223 32037204 + Conep03aG0181900.1 Cone3ag1311 434770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1311 967 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524(InterPro)
Cone3ag1311 967 Gene3D Transferase(Phosphotransferase) domain 1 773 967 - -
Cone3ag1311 967 Gene3D Ribonuclease Inhibitor 348 446 IPR032675 -
Cone3ag1311 967 SMART LRR_typ_2 243 267 IPR003591 -
Cone3ag1311 967 SMART LRR_typ_2 98 122 IPR003591 -
Cone3ag1311 967 SMART LRR_typ_2 194 219 IPR003591 -
Cone3ag1311 967 SMART LRR_typ_2 530 554 IPR003591 -
Cone3ag1311 967 SMART LRR_typ_2 506 529 IPR003591 -
Cone3ag1311 967 SUPERFAMILY L domain-like 42 382 - -
Cone3ag1311 967 FunFam Leucine-rich receptor-like protein kinase family protein 212 310 - -
Cone3ag1311 967 Pfam Protein kinase domain 692 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1311 967 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cone3ag1311 967 Gene3D Ribonuclease Inhibitor 447 629 IPR032675 -
Cone3ag1311 967 SUPERFAMILY L domain-like 317 621 - -
Cone3ag1311 967 Pfam Leucine rich repeat 389 446 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine rich repeat 122 159 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Gene3D Phosphorylase Kinase; domain 1 674 772 - -
Cone3ag1311 967 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 966 IPR050647 -
Cone3ag1311 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1311 967 SUPERFAMILY Protein kinase-like (PK-like) 683 964 IPR011009 -
Cone3ag1311 967 ProSiteProfiles Protein kinase domain profile. 690 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1311 967 SMART serkin_6 690 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1311 967 Pfam Leucine Rich repeats (2 copies) 196 237 IPR025875 -
Cone3ag1311 967 PRINTS Leucine-rich repeat signature 246 259 - -
Cone3ag1311 967 PRINTS Leucine-rich repeat signature 554 567 - -
Cone3ag1311 967 Pfam Leucine Rich Repeat 532 554 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 460 482 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 509 530 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 340 361 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 317 337 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 557 578 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 Pfam Leucine Rich Repeat 365 384 IPR001611 GO:0005515(InterPro)
Cone3ag1311 967 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 773 967 - -
Cone3ag1311 967 FunFam Receptor-like protein kinase HSL1 316 623 - -
Cone3ag1311 967 FunFam Receptor-like protein kinase HSL1 673 772 - -
Cone3ag1311 967 Gene3D Ribonuclease Inhibitor 209 347 IPR032675 -
Cone3ag1311 967 Gene3D Ribonuclease Inhibitor 31 208 IPR032675 -
Cone3ag1311 967 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 31 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1311 Cone-Chr3:32033223 Cone9ag0992 Cone-Chr9:5100982 1.14E-170 dispersed
Cone10ag1255 Cone-Chr10:9613647 Cone3ag1311 Cone-Chr3:32033223 8.07E-284 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82702 PF04669 Polysacc_synt_4 9.30E-68 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1311 - - - 0.0