Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1314 ATGGCTGATCCTCAAGAAAGGTTTGTTTCAAATAGTTTTGTTCAAACCCCAATACTTGGATCTAATCCTCCCGTTGTAAAGAAGAAGAGAAACCTCCCTGGAACTCCAGATCCAGAAGCAGAAGTGATAGCCTTGTCCCCAAAAACTCTAATGGCGACAAATAGATTCTTATGTGAAATATGTGGGAAAGGTTTCCAAAGGGATCAAAACCTACAACTCCATAGACGTGGACATAATCTTCCATGGAAGCTTAAGCAAAGAACAAGCAAGGAGATTAAGAAGCGCGTTTATGTTTGCCCGGAAAAAACATGCGTACATCACCACCCTTCTCGGGCCCTAGGCGACCTCACCGGCATAAAAAAACACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAAAGATATGCTGTTCAGTCAGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTACAAATGTGATTGTGGTACTCTATTTTCACGGAGAGACAGCTTCATCACTCATAGGGCATTTTGTGATGCTTTAGCTGAAGAAACTGCTAGGGTTAATGCAGCAAAAGGCATGGGCAATATCAATTACAACCATTTCATAATGGGATCATCAGCTTCCTCTCTAGGGGCAAATATGGCGAAACCGTACTCTTCTGTTTTCAAACCAATCCCTACGTCGCTCAACGGAGCATCGCCGACAATGCCGGCAGGCCTCCATCTATGGATGGGCCAAGGATCTCAAGCCCACCAATCAATTATGACCCACAATAACAACATCAATCTCCAAGATATTATTCATCATCATGACAACAATGAAGATCATCATCAAGTACTTGTCGGTAATAATTCTCAAGAGTATCATCAGTTGACTTGGGTTTTTGGATCTTCAGGTAATGTTGAACAAGAGCTAACAAGCACTAATTCATTACCACTGAGCCATGTTAAGGATGTTTCTGGAAGTACTAATGATCAGCTTGTTAGTGTTCCTTCTTTATACAGCAATCAATTGCAATTACAACAATGTCATCAAAACCCTAATTATGCAAATATGTCAGCCACAGCTTTGTTACAAAAAGCAGCACAGTTTGGGTCAACTACGACTACTACCCCTCCTACTTCAGCTGACCCATCTATATTTTTAGGGAATTTTGGATTGAAGTGCAATAATATTAGTACTTCTACTACTACTACTACTTCTGTCAATCAAGATGGGAACAAATTTAGCGGATCATATGGTTCAATTAACCCATTAATGCAAATTAGTAGGCTTGGAAACGATGATGTGGAAGATTCGACCGGGAATTTGTCACAGATTTTCCCGGCTGCGAAACGAAGGAAAACGCAGGGGGATCAAGATCAAAGCATGGCAGGAGGTCAAACTAGGGATTTTCTAGGTGTTGGTGTTCAAACCATTTGCCACCCTTCATCAATCCATGGATGGATTTGA 1461 41.34 MADPQERFVSNSFVQTPILGSNPPVVKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAAKGMGNINYNHFIMGSSASSLGANMAKPYSSVFKPIPTSLNGASPTMPAGLHLWMGQGSQAHQSIMTHNNNINLQDIIHHHDNNEDHHQVLVGNNSQEYHQLTWVFGSSGNVEQELTSTNSLPLSHVKDVSGSTNDQLVSVPSLYSNQLQLQQCHQNPNYANMSATALLQKAAQFGSTTTTTPPTSADPSIFLGNFGLKCNNISTSTTTTTSVNQDGNKFSGSYGSINPLMQISRLGNDDVEDSTGNLSQIFPAAKRRKTQGDQDQSMAGGQTRDFLGVGVQTICHPSSIHGWI 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32052872 32055120 - Conep03aG0182200.1 Cone3ag1314 434773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1314 486 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cone3ag1314 486 Gene3D Classic Zinc Finger 90 180 - -
Cone3ag1314 486 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cone3ag1314 486 SMART c2h2final6 132 152 IPR013087 -
Cone3ag1314 486 SMART c2h2final6 56 78 IPR013087 -
Cone3ag1314 486 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cone3ag1314 486 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cone3ag1314 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 474 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone3ag1314 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cone3ag1314 486 FunFam protein indeterminate-domain 12-like 35 103 - -
Cone3ag1314 486 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 194 - -
Cone3ag1314 486 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cone3ag1314 486 Gene3D Classic Zinc Finger 52 79 - -
Cone3ag1314 486 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0574 Cone-Chr17:2964295 Cone3ag1314 Cone-Chr3:32052872 8.07E-104 dispersed
Cone19ag0669 Cone-Chr19:5696424 Cone3ag1314 Cone-Chr3:32052872 1.21E-88 dispersed
Cone19ag1261 Cone-Chr19:8626165 Cone3ag1314 Cone-Chr3:32052872 1.04E-101 dispersed
Cone3ag0282 Cone-Chr3:1468105 Cone3ag1314 Cone-Chr3:32052872 2.70E-103 dispersed
Cone3ag1314 Cone-Chr3:32052872 Cone6ag1610 Cone-Chr6:12459846 1.47E-104 dispersed
Cone10ag1257 Cone-Chr10:9626976 Cone3ag1314 Cone-Chr3:32052872 1.42E-307 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45854 PF00112 Peptidase_C1 1.90E-83 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1314 K25870 - vvi:100252370 574.318