Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1319 ATGGTGGCGGCATTAACGGGGCCCGGCTGCAATGTTATGATCAATGGAGAAGAAGATTCGGAACTCGACCAATTCATGGAGGCTTATTGTGAGATGCTAAGTAAGTATGAACAAGAGCTTACAAAGCCCTTTAAAGAAGCCATGCTTTTCTTTTCGAAGATCGACTCTCAGCTGAAGTCCTTTGCTCATGTTTCGCCTTATACTAGTGATTCTGCTTGTGATAATGTTGGCGAAAATGGACCGTCTGTAGAGGAGTTTGATGTGAATGACAATATAATCGATCCTCAAGCTGAAGATAAGGAGCTAAAAGTTCAGCTCCTGCGCAAGTATAGTGGATATCTAGGCAGTCTCAAGCGGGAGTTTCTGAAGAAGAAAAAGAACGGAAAGTTGCCCAAGGAAGCTCGCCAGCAGTTGCTCGACTGGTGGAGCGGACACTATAAGTGGCCTTACCCCTCGGAGGCACAGAAGGTGGCATTAGCGGAAACTACCGGACTGGATCTGAAACAGATAAACAATTGGTTTATAAATCAAAGGAAACGCCATTGGAAGCCATCTGAAGATATGCAGTTTGTGGTAATGGATGCTTCTACCGCTGCTAGCGGTCACAACCATCATCCTCATCACTACTACTATATGGACAATGGTATCTACAACCATCCCTTTCCTATGGATTGCTCTTCTACTCTACTTTGA 693 44.73 MVAALTGPGCNVMINGEEDSELDQFMEAYCEMLSKYEQELTKPFKEAMLFFSKIDSQLKSFAHVSPYTSDSACDNVGENGPSVEEFDVNDNIIDPQAEDKELKVQLLRKYSGYLGSLKREFLKKKKNGKLPKEARQQLLDWWSGHYKWPYPSEAQKVALAETTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDASTAASGHNHHPHHYYYMDNGIYNHPFPMDCSSTLL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32124771 32126959 + Conep03aG0182700.1 Cone3ag1319 434778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1319 230 CDD homeodomain 133 185 IPR001356 GO:0003677(InterPro)
Cone3ag1319 230 FunFam Homeobox protein knotted-1-like 2 126 188 - -
Cone3ag1319 230 Pfam Homeobox KN domain 141 180 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone3ag1319 230 Gene3D - 120 191 - -
Cone3ag1319 230 Pfam KNOX2 domain 18 61 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone3ag1319 230 SUPERFAMILY Homeodomain-like 123 194 IPR009057 -
Cone3ag1319 230 SMART KNOX2_2 12 63 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone3ag1319 230 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 14 194 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone3ag1319 230 SMART HOX_1 123 188 IPR001356 GO:0003677(InterPro)
Cone3ag1319 230 ProSiteProfiles 'Homeobox' domain profile. 121 184 IPR001356 GO:0003677(InterPro)
Cone3ag1319 230 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone3ag1319 230 Pfam ELK domain 101 122 IPR005539 GO:0003677(InterPro)
Cone3ag1319 230 SMART ELK_2 101 122 IPR005539 GO:0003677(InterPro)
Cone3ag1319 230 ProSiteProfiles ELK domain profile. 101 121 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1319 Cone-Chr3:32124771 Cone4ag1642 Cone-Chr4:12394528 2.96E-71 dispersed
Cone1ag0022 Cone-Chr1:159153 Cone3ag1319 Cone-Chr3:32124771 7.19E-73 wgd
Cone3ag1319 Cone-Chr3:32124771 Cone5ag1845 Cone-Chr5:12953241 5.36E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45855 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1319 - - - 0.0