Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1321 ATGAAACCCCCAATTGGGTCAGTCCCACTTCTTAATCTCATTCCCATCTTCTTCTTCATCTGGGTCTTTCATGGAGCTGAATCAAAGTGCCCTAAAACCTGCGATTTAGCTCTAGCATCATACTACGTCTGGACAGGATCCAACCTTACCTTCATAGCAACCATGCTAAACACAGACGTAGACACAATCGTCGAATACAACAAAGACAAAGTTCCCAACAAAGACAGCGTCCAAGACACCATACGAGTCAATGTTCCATTTCCCTGCGACTGCATCGAGGGAAACCAGGTTCAATTTCTGGGTCATAAATTTCAATACACTGTTCAAGTTGGAGACACGTATGATCGGATAATGTCTTATTATTCCGACTTGACTACGGTTCAGTTGCTGCAGAGCTTTAATAGCTATCCGACTACTAATATTCCTGCTAATGGGATTGTTAATGTGACTGTGACCTGTTCTTGTGGGAATTCTACGGTTTCTAAGGATTATGGGTTGTTTATTACTTACCCTCTTAGGGCGAATGAGACGGTGGATTCGATATCGGCCGAGACAAATATTAGTGTCAATATTCTCAGGGAGTATAATCCTGGAGCGAATTTTAGTGCCGGCAGTGGGATTATTTTTGTTCCGGGAAAAGATGCAAATGGTACCTTTCCACCTCTCGAGAAAAGCACTGGAGGACTGGCAGGTGGAGCTATTGCGGGTATATCAATAGCAGCAGTAGCTGGGTTTTTGGTTTTTGCAGCCTATGGCTATTTCGGGTTTTACCGAAAAAGAAAAGTGCAGGGTGAAAATTTGCTTGGAGTCCCCCTACACCCCTCTTCTCTAGATAGATCTGCAGAAACAAATGGACATGGGGCTGGCTCTATTGGAATCACGGGCATTTCGGTGGACAAATCGGTAGAATTCTCATATGAAGAACTTGCTCTGGCCACTGATAATTTCAGTTTAGCTAATAAAATTGGTGAAGGCGGTTTTGGAGCTGTTTACTATGCAGAGTTGAGAGGCGAGAGGGCTGCTATCAAGAAGATGGATACACAGGCATCAAGGGAATTCCTTGCAGAATTAAAGGTCCTAACTCGTGTTCATCACTTAAACCTGGTGCGCTTGATAGGATACTGTATTGGGGATTCTCTTTTCCTAGTGTACGAATTCATTGAGAACGGAAACTTAAGCCAACATTTACGAGGCACAGGGAGGGATCCATTGCCATGGAATACTAGAGTACAAATAGCTCTAGACTCAGCTAGAGGTCTCGAATATATTCATGAGCATACAGTTCCAGTTTATATCCACCGAGATATCAAATCAGCAAATATATTAATCGACAATAACTTCCATGCAAAGGTTGCAGATTTCGGTTTGACCAAGCTGACTGAAGTTGGGAATGTTTCGGTCCAGTCCCGTCTTGTTGGCACATTTGGATACATGCCACCTGAATATGCTCAATATGGTGATGTTTCTCCAAAAATCGATGTTTATGCTTTTGGGGTTGTGCTATATGAACTGATTTCCGCAAAGGAAGCTATTGTGAAAACAAATAGATCAAGCGCTCTTAATGAATCAAAAGGACTTGTTGCATTGTTTGAAGATGTTCTTGGGGAGCCTGATCCTAGAGAAAGCCTTAAGGAAGTAGTTGACCCTGGACTTGGAGATAATTATCCTCTTGACTCAGTCCTCAAGATGGCTCAACTTGCCAAAGTGTGCACACATGAGAATCCACTGCTACGTCCGAGTATGAGAACTATTGTGGTTGCCCTAATGACCCTTTCTTCCACAACCGAGGATTGGGATATTGGTTCCTTCTATGACAATCAAAATCTTGTCAATCTCATGTCAGGAAGGTAG 1851 42.95 MKPPIGSVPLLNLIPIFFFIWVFHGAESKCPKTCDLALASYYVWTGSNLTFIATMLNTDVDTIVEYNKDKVPNKDSVQDTIRVNVPFPCDCIEGNQVQFLGHKFQYTVQVGDTYDRIMSYYSDLTTVQLLQSFNSYPTTNIPANGIVNVTVTCSCGNSTVSKDYGLFITYPLRANETVDSISAETNISVNILREYNPGANFSAGSGIIFVPGKDANGTFPPLEKSTGGLAGGAIAGISIAAVAGFLVFAAYGYFGFYRKRKVQGENLLGVPLHPSSLDRSAETNGHGAGSIGITGISVDKSVEFSYEELALATDNFSLANKIGEGGFGAVYYAELRGERAAIKKMDTQASREFLAELKVLTRVHHLNLVRLIGYCIGDSLFLVYEFIENGNLSQHLRGTGRDPLPWNTRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDNNFHAKVADFGLTKLTEVGNVSVQSRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAIVKTNRSSALNESKGLVALFEDVLGEPDPRESLKEVVDPGLGDNYPLDSVLKMAQLAKVCTHENPLLRPSMRTIVVALMTLSSTTEDWDIGSFYDNQNLVNLMSGR 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32159066 32165438 - Conep03aG0182900.1 Cone3ag1321 434780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1321 616 ProSiteProfiles Protein kinase domain profile. 316 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1321 616 FunFam PTI1-like tyrosine-protein kinase 3 387 602 - -
Cone3ag1321 616 Pfam Protein tyrosine and serine/threonine kinase 318 587 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1321 616 SUPERFAMILY Protein kinase-like (PK-like) 297 588 IPR011009 -
Cone3ag1321 616 Gene3D Phosphorylase Kinase; domain 1 297 386 - -
Cone3ag1321 616 CDD STKc_IRAK 322 585 - -
Cone3ag1321 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1321 616 Gene3D Transferase(Phosphotransferase) domain 1 387 608 - -
Cone3ag1321 616 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524(InterPro)
Cone3ag1321 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 615 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cone3ag1321 616 SMART serkin_6 316 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1321 616 FunFam LysM receptor kinase 2 295 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1053 Cone-Chr19:7770151 Cone3ag1321 Cone-Chr3:32159066 9.29E-91 dispersed
Cone3ag1321 Cone-Chr3:32159066 Cone6ag1157 Cone-Chr6:8823645 4.70E-168 dispersed
Cone3ag1321 Cone-Chr3:32159066 Cone17ag0133 Cone-Chr17:684423 9.27E-88 transposed
Cone3ag1321 Cone-Chr3:32159066 Cone20ag1276 Cone-Chr20:8330605 1.33E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82703 PF00389 2-Hacid_dh 2.00E-34 CL0325 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1321 K13429 - csv:101203576 822.387