Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1328 ATGGATGTGGCTGATCAATTTATTCCGACCATCTCTCCTCCACCACTTGTGTCGGAGGCCACTACTACTATACACTGCCCTGTCACTCTCAAATCTACCAGATGTGATTCTCACGATCACGAACACGATCTTCACGGCTCTGCTCCAGCGTCCGATGAAAGTGATACTAATAATAATAATCGTGATGATCGGATGGTTGTCAACGAAATGAACTTTTTTGCTGATAATAACAAAGACTCTAGAACTGATCATGCTGGAGATATCAGAAAGGAATTAGATCATGTGATGGGTGCTTCTAAGTTCCAGTACTTGAATGTAAATACTGGTTTGAATCTTCTTACCACAAACTATAGTATCGACAAGTCTATCGTGGATGACATAGGGATGTCTCCTAATGTAGAGCCCAGGCGAGACACAGACGAGCTTCCTGTTCTTCAAGCTGAGCTTGAGCAAATGAACATGGAGAACCGGCGTTTAAAGGAAACTCTAAATAAAGTCACAAGCAATTATCAAGCTTTACGAATCGAATGGATGAATTTGATCATGCTCAACAGGAAGGCTGATCAAAACAACGATCAAGATGATAAAGAAGTAGAGGATCAAAATCCAGCAGTCAAGAAACAAATCATTACCACAAGCCACGTACTTGATGATAATAATAGTAATAATAATGGCCGGAAAATGGTGTCTAGAAATTTCATGGATCTCGGTTTGGCTACAAATGCAGATATTAATGATGATACTAATCAAGATCAGAAGTCGAATTCTTCATCTGAAGGGAGATCATTAGGGCCTCCCGATGATCATCGAGGGGTTGAGAAAAAGAAATTCGAAGGAATGGATATTAATCTAATTATATCATCACCAAGTAGGAGATCGAGAGAAGATAGCCCGGAACAAACCATGTTGACCGTTGGATTATCGGGTTGTACGAGTAATAATCATAAAATTAATAATGTTCAGAGATCGAGTGGTACTAGTGCTGCTGCTTCTTCTAAATATGTTGATCAAACTGAGGCAACCATGAGGAAGGCACGTGTCTCGGTTCGAGCTCGATCGGAGGCTCCTTCGATGACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCTAAGGGAAATCCATGTCCACGAGCTTATTATCGTTGCACTATGGCTGCTGGCTGTCCTGTTCGAAAACAAGTGCAAAGGTGTGCAGAAGATAGAACAATCCTCATAACCACATACGAAGGCAACCATAACCATCCATTGCCACCAGCCGCCATGGCAATGGCCTCATCAACATCGTCTGCTGCACATATGCTCCTCTCCGGCTCAATGTTGAGCCCAGATGGCCTAATGAACTCAAATTTCTTAACAAGGACTCTCCTCCCATGCAGTTCAAGCATGGCCACTATTTCAGCCTCAGCTCCATTCCCCACAGTTACGCTAGATCTCACTCAAAACCCTAACCCTCTAGAGTCCCAAAGACCACCCCAGGACCAATTCCAAATCCCTTTCCCAACAAACCAACCTCAAAATATTACAAACTCTTCACCCTCTCAATTAATACCTCAAATCATGGGACAAGTCTTATATAACCAATCAAAATTCTCAGGCCTTCAGATGTCACAAGATCAACTGAACCATACAAGCGAATTCAGTGCAGCTTCTGCGGCTGTTATTGCATCCGACCCTAATTTTACAGCAGCTCTAGCGGCAGCCATTAGTTCTATTATTGGGGGTGCTCATCAAGACAACAACAATGTTTGTGACAATAATGGAAACGTTCATTCTTCTAATAAATATAGTAACGGGAACAATTCTACTAGCAACTACAATAGTTATATGGGCAATTAG 1842 42.24 MDVADQFIPTISPPPLVSEATTTIHCPVTLKSTRCDSHDHEHDLHGSAPASDESDTNNNNRDDRMVVNEMNFFADNNKDSRTDHAGDIRKELDHVMGASKFQYLNVNTGLNLLTTNYSIDKSIVDDIGMSPNVEPRRDTDELPVLQAELEQMNMENRRLKETLNKVTSNYQALRIEWMNLIMLNRKADQNNDQDDKEVEDQNPAVKKQIITTSHVLDDNNSNNNGRKMVSRNFMDLGLATNADINDDTNQDQKSNSSSEGRSLGPPDDHRGVEKKKFEGMDINLIISSPSRRSREDSPEQTMLTVGLSGCTSNNHKINNVQRSSGTSAAASSKYVDQTEATMRKARVSVRARSEAPSMTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASSTSSAAHMLLSGSMLSPDGLMNSNFLTRTLLPCSSSMATISASAPFPTVTLDLTQNPNPLESQRPPQDQFQIPFPTNQPQNITNSSPSQLIPQIMGQVLYNQSKFSGLQMSQDQLNHTSEFSAASAAVIASDPNFTAALAAAISSIIGGAHQDNNNVCDNNGNVHSSNKYSNGNNSTSNYNSYMGN 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32232091 32235165 + Conep03aG0183600.1 Cone3ag1328 434787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1328 613 MobiDBLite consensus disorder prediction 482 513 - -
Cone3ag1328 613 MobiDBLite consensus disorder prediction 35 49 - -
Cone3ag1328 613 MobiDBLite consensus disorder prediction 242 262 - -
Cone3ag1328 613 MobiDBLite consensus disorder prediction 585 613 - -
Cone3ag1328 613 SMART WRKY_cls 358 418 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1328 613 MobiDBLite consensus disorder prediction 35 62 - -
Cone3ag1328 613 FunFam probable WRKY transcription factor 31 343 420 - -
Cone3ag1328 613 Pfam WRKY DNA -binding domain 360 417 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1328 613 SUPERFAMILY WRKY DNA-binding domain 352 419 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1328 613 MobiDBLite consensus disorder prediction 205 228 - -
Cone3ag1328 613 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 132 581 IPR044810 GO:0003700(InterPro)
Cone3ag1328 613 Gene3D WRKY domain 343 420 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1328 613 MobiDBLite consensus disorder prediction 241 333 - -
Cone3ag1328 613 MobiDBLite consensus disorder prediction 263 280 - -
Cone3ag1328 613 ProSiteProfiles WRKY domain profile. 353 419 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1328 613 Coils Coil 142 176 - -
Cone3ag1328 613 MobiDBLite consensus disorder prediction 190 228 - -
Cone3ag1328 613 MobiDBLite consensus disorder prediction 299 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0085 Cone-Chr19:498410 Cone3ag1328 Cone-Chr3:32232091 1.06E-48 dispersed
Cone3ag1328 Cone-Chr3:32232091 Cone3ag0455 Cone-Chr3:2192890 2.53E-21 dispersed
Cone3ag0945 Cone-Chr3:4905876 Cone3ag1328 Cone-Chr3:32232091 4.02E-42 transposed
Cone1ag0014 Cone-Chr1:120101 Cone3ag1328 Cone-Chr3:32232091 1.23E-112 wgd
Cone12ag1367 Cone-Chr12:10158602 Cone3ag1328 Cone-Chr3:32232091 1.41E-112 wgd
Cone3ag1328 Cone-Chr3:32232091 Cone5ag1852 Cone-Chr5:12997959 1.30E-96 wgd
Cone3ag1328 Cone-Chr3:32232091 Cone8ag1424 Cone-Chr8:11102295 1.59E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45856 PF00107 ADH_zinc_N 3.90E-18 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1328 - - - 0.0