Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1339 ATGAGGAAATTGCTTGTTCATGAGTCTGCGTTTATTATGATATGGGCATTTCTGGGTGGGTCTGTAATTTGCAAAAAGCCGAGTGTTGTGAACGTCGGTGTGATTTTCAGTTTCGATTCGGTGATAGGAAGAGCTTCAAAGCTTGCTCTAGAAGCAGCGGCTGAAGATGTAAATGCGGATCCGAGTATTCTTAATGGGACTGAGCTCAAATTGATCATGCACGATTCTAGTTGTAATCCCTTTCTGGGTTCCATTGAAGTTTTTCAGGCACTTGAGAATGAGATAGTGGCCATTGTGGGCCCACAATCTTCCAATGTAGCTCATATTATCTCTCATATCGCTAGCAGCCTCCAAGTACCCCTTGTCTCATACGCGTCAACTGATCCAACTCTCTCTTCCCTCCAATTCCCCTTCTTTCTCCGAACAACTCAAACTGATTCCTACCAAATGGCTGCCATGGCTGACCTCATCGACTTCTACAACTGGAAAGAAATCATTGCTGTCTTCATAGATGATGATTATGGAAGAAACGGAATATCTTCTCTAGAAGATGAACTTCTAAAGAAGATGTCGAGAATTTCCTACAAATTGCCCTTACCTTCGCAATTTGATATCAATGAGGTTACAAAATTGCTCAATAGTTCAAAATTGTTTGGTCCTAGAGTCTATGTTGTTCATATTAATCCCGATCCCGAATTAAGAATCCTTACTATAGCTTATAATCTTGGAATGATGAGAAGTGATTATGTCTGGCTTTCAACTGATTGGCTATCTGTTACAATAGATTCTTTCTCCGAAATGAAAAGACAAACTTCTATGAGTATTATTCAAGGGGTGGTTGGGTTTAGACACCATATTCCGGAATCAAACAGGAAGAACGATTTATGGGCTCGGTTGAATAAGAAACGGCAAGAAGGTTTATTGAATAGCTATGCACTTTATGCTTATGATACAATATGGGTAGTTGCGAATTCAATCGACAAGTTCATAAAAATTCATGGCGGGAACATTTCCTTCTCTTTGACAGATAAATTACCTGATTCAAATGGGTCTGGAATTGATTTGGGGAAACTCAAAGTCTTTAATGATGGAGCTCTATTGCTAAGGATATTATTGGAAACAAATTTCAAAGGGTTAACAGGTCAAATCCGGTTTAATGCAGATCGAAACATTTTGAGTGGAAGTTATGAGGTGATTAATTTTGCCGGGATGGGGATTAGTACGGTCGGTTATTGGTCTAATTTCTCAGGATTTACAATTTTGCCCCCGGAAAATCTTGGTGAGAAAGAAAATAGCAGCAATCTGTTGTTTGACCAGAAACTAGAGAATGTTACTTGGGCCGGTGGAAATACTGAAAGACCACGTGGTTGGGTGGTTGCGGATGATGAAAAACCGTTGAGAATTGGGGTTCCAAACAGAGCAAGTTTCGTTGAATTTGTTACGAAAATAAATAATACCGGAAAAATGGAAGGATATACTGTTGATATTTTCACTCAAGCCTTGAAGTTAGTCCCATATAATGTTCCTTATAGATTAGTTTCTTTCGGGAATGGTCTGTCCAATCCAAGTTATGCGCAGCTTGTGGGGAATGTTGCAGATGGTATGTTTGATGCAGCGATTGGAGACATTGCAATCGTAACAAACAGGACAAAAGTTGTAGATTTTTCTCAGCCTTTTGTTTCTACGGGACTTGTCATAGTGGCTCCTATAAAGAAGTCAAAGTCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTTGAACTGTGGTGTGTAACTGCCGCTGCTTTTGTGATGATTGGGACCGTTATTTGGATTCTTGAGCATCGAGTTAATGAGGATTTCCGGGGTCCTCCCAGGCACCAGATTGCGACTATTTTCTTGTTCAGCTTCTCAACTCTGTTCAAGACAAATCAGGAAAAGATGGTAAGCACACTAGGGCGAATGGTGATGATGATCTGGCTTTTCTTATTAATGGTTATCACATCAAGCTATACGGCAAGCTTGACGTCGATCCTAACAGTTCAACAGCTTTCATCTTCCATAACCGGAATAGATGAGTTGATTGCAACTAATTCACCTATCGGGTACCAAGTAGGTTCATTTGCTTATAGCTATCTAACGGAGGGTCTTTTCATTCCTGGGTCTAGACTTGTTTCTCTAGGCACCCCGGAGGAATATGAGAGAGCATTGCAGCTCGGACCGGCAGCTCCAGGAGGGGTGGCAGCTATAATAGATGAGCTTCCCTATGTGGAGTTGTTTTTGTCCAGGACTACGGATTTCCGTATTGTCGGTCAGCCATTTACCAAGAGTGGTTGGGGATTTGCTTTCCAGAAAGAATCTCCCCTTGCTATAGACATCTCCACGGCGATATTGAAGCTCTCAGAGAATGGAGATCTTCAGAAGATTCACAAGAAGTGGTTTTGTAAGATGAATTGTCCAGGAGAGAGAGAAAAGAATTCCAAGCCTAACCAACTCCACTTGATAAGCTTTTGGGGTCTATATCTACTTTGCGGCATCAGTTCTCTTCTAGCCCTTTTCATATTCCTTGTAAGGATGGTTCGCCAATATATCCGCTATAAACGGAAACAGATGGATCCAAATTCCTCTTCTTCTCTTTCGGCTACTTCGTTCTCTATATCATCTAATGCTAGTTGCTCTCATGTCATTCAAAACTTCATTGATTTTGTGGATGAGAAGGAAGAATCCATTAAGAAGATTTTCGGGACAAGTGAAGTCGCTCCTCATGTTCAAGCAAGTTGA 2760 40.94 MRKLLVHESAFIMIWAFLGGSVICKKPSVVNVGVIFSFDSVIGRASKLALEAAAEDVNADPSILNGTELKLIMHDSSCNPFLGSIEVFQALENEIVAIVGPQSSNVAHIISHIASSLQVPLVSYASTDPTLSSLQFPFFLRTTQTDSYQMAAMADLIDFYNWKEIIAVFIDDDYGRNGISSLEDELLKKMSRISYKLPLPSQFDINEVTKLLNSSKLFGPRVYVVHINPDPELRILTIAYNLGMMRSDYVWLSTDWLSVTIDSFSEMKRQTSMSIIQGVVGFRHHIPESNRKNDLWARLNKKRQEGLLNSYALYAYDTIWVVANSIDKFIKIHGGNISFSLTDKLPDSNGSGIDLGKLKVFNDGALLLRILLETNFKGLTGQIRFNADRNILSGSYEVINFAGMGISTVGYWSNFSGFTILPPENLGEKENSSNLLFDQKLENVTWAGGNTERPRGWVVADDEKPLRIGVPNRASFVEFVTKINNTGKMEGYTVDIFTQALKLVPYNVPYRLVSFGNGLSNPSYAQLVGNVADGMFDAAIGDIAIVTNRTKVVDFSQPFVSTGLVIVAPIKKSKSSAWVFLKPFTVELWCVTAAAFVMIGTVIWILEHRVNEDFRGPPRHQIATIFLFSFSTLFKTNQEKMVSTLGRMVMMIWLFLLMVITSSYTASLTSILTVQQLSSSITGIDELIATNSPIGYQVGSFAYSYLTEGLFIPGSRLVSLGTPEEYERALQLGPAAPGGVAAIIDELPYVELFLSRTTDFRIVGQPFTKSGWGFAFQKESPLAIDISTAILKLSENGDLQKIHKKWFCKMNCPGEREKNSKPNQLHLISFWGLYLLCGISSLLALFIFLVRMVRQYIRYKRKQMDPNSSSSLSATSFSISSNASCSHVIQNFIDFVDEKEESIKKIFGTSEVAPHVQAS 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32373385 32378414 + Conep03aG0184700.1 Cone3ag1339 434798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1339 919 PIRSF IGluLR_plant 3 918 IPR017103 -
Cone3ag1339 919 FunFam Glutamate receptor 577 707 - -
Cone3ag1339 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 315 327 - -
Cone3ag1339 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Cone3ag1339 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Cone3ag1339 919 SUPERFAMILY Periplasmic binding protein-like I 25 420 IPR028082 -
Cone3ag1339 919 SUPERFAMILY Periplasmic binding protein-like II 444 808 - -
Cone3ag1339 919 SMART GluR_14 467 809 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone3ag1339 919 Gene3D - 754 814 - -
Cone3ag1339 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 873 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone3ag1339 919 Pfam Bacterial extracellular solute-binding proteins, family 3 474 585 IPR001638 -
Cone3ag1339 919 Gene3D - 145 418 - -
Cone3ag1339 919 Pfam Receptor family ligand binding region 47 403 IPR001828 -
Cone3ag1339 919 CDD PBP1_GABAb_receptor_plant 31 419 IPR044440 -
Cone3ag1339 919 Gene3D - 577 705 - -
Cone3ag1339 919 CDD GluR_Plant 464 807 - -
Cone3ag1339 919 FunFam Glutamate receptor 703 811 - -
Cone3ag1339 919 Pfam Ligand-gated ion channel 808 840 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone3ag1339 919 Gene3D - 48 394 - -
Cone3ag1339 919 FunFam Glutamate receptor 461 577 - -
Cone3ag1339 919 FunFam Glutamate receptor 145 306 - -
Cone3ag1339 919 Gene3D - 462 576 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0877 Cone-Chr12:7816693 Cone3ag1339 Cone-Chr3:32373385 1.36E-300 dispersed
Cone3ag1339 Cone-Chr3:32373385 Cone8ag0908 Cone-Chr8:8803388 5.97E-294 dispersed
Cone3ag1339 Cone-Chr3:32373385 Cone3ag1340 Cone-Chr3:32383157 2.30E-258 tandem
Cone10ag1283 Cone-Chr10:9895168 Cone3ag1339 Cone-Chr3:32373385 1.97e-310 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1339 K05387 - csv:101215715 1207.97