Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1340 ATGAATGCAATAACTGATCTAGTCGTTTTTTATGGTTGGAGGGAAGTCATAGCCATCTACGTAGATGATGATTATGGAAGAAATGGGATATCGGCATTAGGCGATGCTTTGGGAAAAAAACGCGCGAAAATCTCTTACAAAGCCGCCCTTACTCCTGGAGCTTCTAGAAGCAAAATCAACAACTTGTTGGTTGAAGTCAACCTTATGGAATCTCGGGTTTATGTTGTACATGTCAACCCTGACTCGGGTTTGACTATATTCTCCATTGCTAAGGCTCTCAAGATGATGGGTAATGGTTATGTTTGGATCACAACCGACTGGCTTCCTTCTCTTCTTGATTCTCTAGATACGACTAATTCAGATGTAATGAATTTGATCCAAGGTGTTGTCACTCTTCGTCATTATACTCCGGATAGTGCCCTCAAGAAAAATTTCAGGTTGAAATGGAAGGGATTAAAATATGAGAGGAGTGTGAACTTCAATTCTTATGCGCTTTATGCTTATGATTCTGTATGGTTAGTGGCCCATGCTCTGGACCTTTTCTTCAAGGAAGGAGGGAACATATCTTTTTCTAATGACCCGAAACTGCATGACACGAATGGGAGCATGCTTCATTTGAAGTCGCTCCGTATTTTCGATGGTGGGCCCCAACTTCTCCAGACAATTTTGAGGATGAACTTCACGGGTTTGAGCGGCCAGATTGCATTCGATCCGGAGAAAAATTTAGTAAATTCCGCATTTGATGTTTTGAACGTTGGTGGGACAGGTACACGTAGAGTTGGTTATTGGTCAAATTATTCTGGTCTTTCTAAGGTTACTCCGGAGATTCTATACACAAAACCTCCTAATACTTCTACTAGTAGTCAAGGTCTTTATACTGTCATATGGCCTGGAGAAACCACGACAATTCCTAGGGGATGGGTTTTTCCAGACAATGGGAAGCCATTAAGGATTGGGGTCCCATACCGAGTTAGTTACCAAGAATATGTTACTAAAGACAAGAACCCACCTGGGGTTAGAGGGTTTTGTATTGATGTGTTTGAAGCTGCCTTGAATCTATTGCCTTATGCTGTCCCACACACGTATATATTATATGGAAATGGAAAGGATAATCCCGAGTATAGCAATCTTGTTTATGATGTTTCCCAAAATAAATATGATGCAGCTGTTGGGGATGTAACGATTACTACAAATCGGACAAGGATTGTGGATTTCACACAACCCTACATCGAATCGGGTCTTGTTGTAGTTGTTGCGGTCAAAGAGCAGAAGTCAAGCCCATGGGCTTTTCTCCGGCCCTTTACTTTTCAGATGTGGTGTGTCACTGGTCTCTTTTTCCTTTTCGTCGGAGCGGTTGTTTGGATTCTCGAGCACCGGAGTAATGAGGATTTCCGGGGCCCACCTAGGCAACAACTCATAACAATATTCTGGTTTAGTTTCTCTACGATGTTTTTCTCCCACAGAGAGAATACGGTCAGCACTCTAGGGCGATTGGTTCTGATCATATGGCTATTTGTAGTGTTAATTATCAATTCAAGCTACACGGCTAGTTTGACTTCGATCCTGACCGTTCAACAGCTGACATCAAAGATTGAAGGGATCGACAGCTTGATTTCGAGCTCTGAACCGATTGGAGTTCAAGTAGGATCCTTTGCATTTAAGTATTTGATGAATGAGCTCAATATACTGGAATCAAGGATTGTAAAGTTGAAAGGGAAAGAAGAGTATGAGAATGCTCTTTTGCGTGGGCCTAGGGGTGGGGGCGTAGCGGCCATTGTCGACGAACTTCCTTACATTGAGCTCTTCTTGTCGGATACAAAATGCAAGTTCAGGACCGTTGGACAAGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCACCCCTAGCAGTTGATCTATCCACTGCCATTCTCCAACTTTCCGAAAATGGCGACCTCCAAAAGATCCATGATAAATGGCTGTCAAATACCGACTGCAATGCACAAGTCAACCAAGTGGACGACAACCGCTTATCTCTCAGCAGCTTCTGGGGACTTTTTCTTATTTGTGGCATCGCTTGCTTCCTTGCTCTTGTTGTGTTCTTCCTTAGAGTCCTCTTTCAATATTTGAAATTCTTGCCGGAAACTGAAATGGATGTTGAGGAGATTGAACCGGGAAGTTCTAGGCAGCCAAGCCGGGCAACAAGCTTTAAAAGCTTTAAGCATTTCGTCGATAGGAAAGAGATTGAGATTAAGCAAGAGAGACTTAAGAGAAAGGCTAGTCAAGATGTGAAACAAGGGGCTAGCTTAGGCTTGGACGCGCAGTCCAATCCGTCGCTTTAG 2331 43.16 MNAITDLVVFYGWREVIAIYVDDDYGRNGISALGDALGKKRAKISYKAALTPGASRSKINNLLVEVNLMESRVYVVHVNPDSGLTIFSIAKALKMMGNGYVWITTDWLPSLLDSLDTTNSDVMNLIQGVVTLRHYTPDSALKKNFRLKWKGLKYERSVNFNSYALYAYDSVWLVAHALDLFFKEGGNISFSNDPKLHDTNGSMLHLKSLRIFDGGPQLLQTILRMNFTGLSGQIAFDPEKNLVNSAFDVLNVGGTGTRRVGYWSNYSGLSKVTPEILYTKPPNTSTSSQGLYTVIWPGETTTIPRGWVFPDNGKPLRIGVPYRVSYQEYVTKDKNPPGVRGFCIDVFEAALNLLPYAVPHTYILYGNGKDNPEYSNLVYDVSQNKYDAAVGDVTITTNRTRIVDFTQPYIESGLVVVVAVKEQKSSPWAFLRPFTFQMWCVTGLFFLFVGAVVWILEHRSNEDFRGPPRQQLITIFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSSEPIGVQVGSFAFKYLMNELNILESRIVKLKGKEEYENALLRGPRGGGVAAIVDELPYIELFLSDTKCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSNTDCNAQVNQVDDNRLSLSSFWGLFLICGIACFLALVVFFLRVLFQYLKFLPETEMDVEEIEPGSSRQPSRATSFKSFKHFVDRKEIEIKQERLKRKASQDVKQGASLGLDAQSNPSL 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32383157 32387750 + Conep03aG0184800.1 Cone3ag1340 434799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1340 776 Gene3D - 134 244 - -
Cone3ag1340 776 Gene3D - 1 269 - -
Cone3ag1340 776 Pfam Receptor family ligand binding region 1 254 IPR001828 -
Cone3ag1340 776 CDD GluR_Plant 314 657 - -
Cone3ag1340 776 Gene3D - 311 426 - -
Cone3ag1340 776 FunFam Glutamate receptor 311 427 - -
Cone3ag1340 776 Pfam Ligand-gated ion channel 659 690 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone3ag1340 776 SUPERFAMILY Periplasmic binding protein-like I 2 308 IPR028082 -
Cone3ag1340 776 Gene3D - 427 566 - -
Cone3ag1340 776 Gene3D - 605 664 - -
Cone3ag1340 776 FunFam Glutamate receptor 553 661 - -
Cone3ag1340 776 PIRSF IGluLR_plant 1 773 IPR017103 -
Cone3ag1340 776 SMART GluR_14 317 659 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone3ag1340 776 FunFam Glutamate receptor 1 154 - -
Cone3ag1340 776 MobiDBLite consensus disorder prediction 754 776 - -
Cone3ag1340 776 FunFam Glutamate receptor 427 557 - -
Cone3ag1340 776 SUPERFAMILY Periplasmic binding protein-like II 291 658 - -
Cone3ag1340 776 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 734 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone3ag1340 776 Pfam Bacterial extracellular solute-binding proteins, family 3 372 435 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1283 Cone-Chr10:9895168 Cone3ag1340 Cone-Chr3:32383157 0 dispersed
Cone12ag1294 Cone-Chr12:9853275 Cone3ag1340 Cone-Chr3:32383157 2.76E-286 dispersed
Cone3ag1340 Cone-Chr3:32383157 Cone8ag0908 Cone-Chr8:8803388 2.90E-295 dispersed
Cone3ag1339 Cone-Chr3:32373385 Cone3ag1340 Cone-Chr3:32383157 2.30E-258 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1340 K05387 - csv:101215485 1152.5