Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1343 ATGTTCCAACCGTACATGTTGGAGAGTCACCAAGTACTCCACCCTCTAGATCACATGACACAGAACACATCGGAAGACAGTGATCCAGCCGGAAGAATGGGCGGTGATGATGATTTTGACAGTGCTACAAAATCCGACGGCCTTGACATAGCCGCTTCAGGTGGCGGGACCGGTGATGACCAAGATCAGCAACGCCGCAATAAACGGAAGCGCTACCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCATTTTTCAAGGAGTGTCCACACCCAGATGACAAACAAAGGAAGGAACTGAGCAGGGAATTAGGGTTAGAGCCATTACAAGTCAAGTTTTGGTTCCAAAACAAACGTACACAAATGAAGACGCAACATGAGCGGCATGAAAACACACAGCTTCGAAATGATAATGAAAAGCTGAGAGTTGATAATATGAGATATAGAGAAGCTCTTAGCAATGCCTCATGTCCCAACTGTGGAGGCCCGACTGCTATCGGAGAGATGTCGTTTGATGAACATCATTTGAGGATTGAAAATGCCCGTCTCCGGGAAGAGATTGATCGAATTTCAGGTATAGCTGCGAAATATGTCGGCAAGCCGAATGGAAACTTCCCATGTAGTCTCCTCTCTCCATCCAATATGCCACCTCGGCCACTCGAACTCGGCATGATGAATTACAGTGGGCCCACACCGGCCAGTATTGGCGGCGGTGACATATATGGAGGGGGAGGAGATCTTTTAAGGTCAATCACACCACCAACCGAGGCCGATAAGCCGATGGTAGTAGACCTAGCGGTTTTGGCTATGGAGGAACTAATCCAAATGGCTCAAATTGGAGAGCCGTTATGGATGACAAGCGTTGATGGGACGAACACCGTAGTGCTCAATGAGGACGAGTATCTGCGATCATTTCCTAGAGGAATAGGTCCTAGGCCTTCTGGGTTTAAGTGCGAAGCTTCGCGTGAAACTGTGGTTGTCATCATGGATCATATAAACCTCGTTTCGATGCTCATGGATGTGAATCAGTGGTCGACTGTGTTTTCTGGGATTGTCTCAAGAGCTATGACGCTTGAAGTATGGTCAACTGGTGTTGCTGGAAGTTACAATGGTGCTGTTCAAGTGATGACATCGGAATTTCAAGTTCCTTCACCACTAGTTCCTACACGTGAGAGCTACTTCGTAAGGTACTGTAAACAGCATGCTGATGGCACGTGGGCAGTGGTTGATGTTTCCTTGGACAATCTTCGCCCGAGTCCAATTCCATTGAGATGTAGAAGAAGGCCATCTGGTTGTCTAATCCAAGAAATGCCCAATGGCTGTTCAAAGGTAACATGGGTGGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTATACAAGCAGCTTGTAAGCTCGGGTCATGCATTTGGTGCAAAGCGTTGGGTTTCGATCTTAGACCGTCTGTGCGAACGTCTTACCAGCGCCATGGCAACCAATGTCCCAACCGGTGACGTCGGAGTGTTTACGAGTGAAGATGGGAGGAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTGATAAGCTTCTGTGGAGGAGTGAGTGCGTCGACAACACATACATGGACGACACTTTCTGGCACTGGTGCTGATGATCATGTTAGGGTTATGACAAGGAAGAGCATAGATGATCCAGGCCGACCTCCCGGTATTGTGCTTAGTGCTGCTACTTCCTTCTGGCTTCCCGCTCCTCCCAAAAGAGTTTTCAATTTCCTCCGTGACAAAAATTCTCGTAGCGAGTGGGACATTCTATCAAATGGTGGAGTTGTTCAAGAAATGGCACACATTGCTAATGGCAGAGACACAGGCAATTGTGTCTCTTTGTTGCGGGTAAATAGTGCAAATTCAAGCCAGAGCAACATGCTAATCTTACAAGAGAGTTGCACAGACCAAACAGGCTCTTACGTAATCTACGCTCCCGTCGATATAGTCGCGATGAACGTTGTCTTGAACGGAGGGGACCCAGATTACGTGGCACTACTCCCATCAGGATTCGCTATCCTACCTGATGGAACTAGTTGTTCTTCATCCAACGGTCATCATCAAATCAGTGCAGGATCGTCATCGTCATCTGCACCGTCATCTCCTGGTGGTTCCCTCTTGACCGTTGCTTTCCAGATTCTGGTTGATTCAGTTCCAACCGCTAAGCTGAATCTTGGCTCAGTTGCTACTGTGAACAATCTCATTGCCTGCACTGTTCAAAGGATCAAAGCTGCTTTATCATGCGACAATGCATGA 2280 47.72 MFQPYMLESHQVLHPLDHMTQNTSEDSDPAGRMGGDDDFDSATKSDGLDIAASGGGTGDDQDQQRRNKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRNDNEKLRVDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISGIAAKYVGKPNGNFPCSLLSPSNMPPRPLELGMMNYSGPTPASIGGGDIYGGGGDLLRSITPPTEADKPMVVDLAVLAMEELIQMAQIGEPLWMTSVDGTNTVVLNEDEYLRSFPRGIGPRPSGFKCEASRETVVVIMDHINLVSMLMDVNQWSTVFSGIVSRAMTLEVWSTGVAGSYNGAVQVMTSEFQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPIPLRCRRRPSGCLIQEMPNGCSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVSILDRLCERLTSAMATNVPTGDVGVFTSEDGRKSMLKLAERMVISFCGGVSASTTHTWTTLSGTGADDHVRVMTRKSIDDPGRPPGIVLSAATSFWLPAPPKRVFNFLRDKNSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDQTGSYVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSCSSSNGHHQISAGSSSSSAPSSPGGSLLTVAFQILVDSVPTAKLNLGSVATVNNLIACTVQRIKAALSCDNA 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32393603 32399364 - Conep03aG0185100.1 Cone3ag1343 434802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1343 759 Gene3D - 320 481 IPR023393 -
Cone3ag1343 759 SMART HOX_1 67 130 IPR001356 GO:0003677(InterPro)
Cone3ag1343 759 FunFam Homeobox-leucine zipper protein HDG1 56 142 - -
Cone3ag1343 759 SUPERFAMILY Bet v1-like 256 488 - -
Cone3ag1343 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 756 IPR042160 -
Cone3ag1343 759 MobiDBLite consensus disorder prediction 13 77 - -
Cone3ag1343 759 Pfam START domain 270 487 IPR002913 GO:0008289(InterPro)
Cone3ag1343 759 SMART START_1 265 487 IPR002913 GO:0008289(InterPro)
Cone3ag1343 759 SUPERFAMILY Homeodomain-like 56 126 IPR009057 -
Cone3ag1343 759 ProSiteProfiles START domain profile. 256 490 IPR002913 GO:0008289(InterPro)
Cone3ag1343 759 Gene3D - 57 143 - -
Cone3ag1343 759 MobiDBLite consensus disorder prediction 30 44 - -
Cone3ag1343 759 CDD START_ArGLABRA2_like 260 486 - -
Cone3ag1343 759 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677(InterPro)
Cone3ag1343 759 SUPERFAMILY Bet v1-like 508 751 - -
Cone3ag1343 759 FunFam Homeobox-leucine zipper protein GLABRA 2 265 486 - -
Cone3ag1343 759 Pfam Homeodomain 69 124 IPR001356 GO:0003677(InterPro)
Cone3ag1343 759 Coils Coil 132 152 - -
Cone3ag1343 759 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone3ag1343 759 CDD homeodomain 68 127 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1284 Cone-Chr10:9902693 Cone3ag1343 Cone-Chr3:32393603 0 dispersed
Cone12ag1384 Cone-Chr12:10229796 Cone3ag1343 Cone-Chr3:32393603 0 dispersed
Cone14ag1128 Cone-Chr14:9389140 Cone3ag1343 Cone-Chr3:32393603 9.87E-113 dispersed
Cone15ag1147 Cone-Chr15:9316403 Cone3ag1343 Cone-Chr3:32393603 7.86E-11 dispersed
Cone15ag1148 Cone-Chr15:9317565 Cone3ag1343 Cone-Chr3:32393603 2.05E-42 dispersed
Cone3ag1343 Cone-Chr3:32393603 Cone8ag1442 Cone-Chr8:11179665 0 dispersed
Cone3ag1342 Cone-Chr3:32391730 Cone3ag1343 Cone-Chr3:32393603 6.62E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45858 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1343 K09338 - gmx:100809556 1170.61