Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1346 ATGGGAACTCGATTTCCTCGGAGTAATTCCGAAGTGGGAATGGAAGCTTTCAATAAACAGATACAAGAGGTCGAGAAACAGGTGGATAAGCTCTCGGGTCTACTAATTAAGCTTAAGGACGCTAATGAGGAAACAAAGTCCGTTACAAAAGCATCCACCATGAAAGTTATCAAGAAGCGGATGGAAAAGGATATCGACGAAGTGGGAAAGATTGCTCGTAATATTAAAGCAAAATTGGAAGCAATAAACAAAGAAAACTTGGCCAATAGACAGAAGCTCGGATGTGAGAAAGGAACAGCCGTTGATCGGGCTAGAACGAACATGACAAATTCCTTAACGAAAAAGTTCAAGGAGATAATGACTGAGTTTCAAATGCTTAGACAAAGAATACAAGACGAATACCGCGAAGTTGTAGAAAGAAGAGTCATGACAGTGACAGGAACAAGACCAGATGAAGATACAATTGACAATCTCATAGAAACCGGAAACAGTGAGCAAATCTTCCAAAATGCGATTCAAGAAATGGGACGGGGCCAGGTTATGAATACAGTGGAAGAAATTCAAGAACGGCATGATGCTGTGAAAGAAATCGAGAAGAAGCTTATGGACCTGCATCAGATATATGTCGATATGGCGGTCTTAGTAGATGCTCAAGGCGAAATTTTAGATAACATAGAAAATCAGGTGACAAATGCAGTGGACCATGTGAGGATGGGAACAGATGCTCTACAAACAGCAAAGAGCTTGCAAAAGAAATCAAGGAAATGCATGATGATTGCTATTATTTTGCTTCTGGTTATAGCAATTATCATTGTACTCTCTATTGTGAAGCCATGGAAGAAGTGA 846 40.07 MGTRFPRSNSEVGMEAFNKQIQEVEKQVDKLSGLLIKLKDANEETKSVTKASTMKVIKKRMEKDIDEVGKIARNIKAKLEAINKENLANRQKLGCEKGTAVDRARTNMTNSLTKKFKEIMTEFQMLRQRIQDEYREVVERRVMTVTGTRPDEDTIDNLIETGNSEQIFQNAIQEMGRGQVMNTVEEIQERHDAVKEIEKKLMDLHQIYVDMAVLVDAQGEILDNIENQVTNAVDHVRMGTDALQTAKSLQKKSRKCMMIAIILLLVIAIIIVLSIVKPWKK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32432230 32434657 + Conep03aG0185400.1 Cone3ag1346 434805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1346 281 SMART tSNARE_6 179 246 IPR000727 -
Cone3ag1346 281 Coils Coil 14 44 - -
Cone3ag1346 281 SMART SynN_4 9 135 IPR006011 GO:0016020(InterPro)
Cone3ag1346 281 Pfam Syntaxin 17 219 IPR006011 GO:0016020(InterPro)
Cone3ag1346 281 Gene3D - 9 138 - -
Cone3ag1346 281 CDD SynN 14 171 IPR006011 GO:0016020(InterPro)
Cone3ag1346 281 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 184 246 IPR000727 -
Cone3ag1346 281 SUPERFAMILY t-snare proteins 12 239 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone3ag1346 281 FunFam Syntaxin 132 177 277 - -
Cone3ag1346 281 Gene3D - 174 277 - -
Cone3ag1346 281 PANTHER SYNTAXIN 17 265 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone3ag1346 281 CDD SNARE_syntaxin1-like 183 245 - -
Cone3ag1346 281 Pfam SNARE domain 220 272 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0457 Cone-Chr13:4925873 Cone3ag1346 Cone-Chr3:32432230 7.42E-110 dispersed
Cone3ag0557 Cone-Chr3:2748964 Cone3ag1346 Cone-Chr3:32432230 9.13E-105 dispersed
Cone3ag1346 Cone-Chr3:32432230 Cone6ag1632 Cone-Chr6:12550084 1.08E-32 dispersed
Cone1ag0131 Cone-Chr1:738960 Cone3ag1346 Cone-Chr3:32432230 1.91E-72 wgd
Cone3ag1346 Cone-Chr3:32432230 Cone5ag1736 Cone-Chr5:12339572 2.78E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1346 K08486 - mdm:103442593 449.514