Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag1346 | ATGGGAACTCGATTTCCTCGGAGTAATTCCGAAGTGGGAATGGAAGCTTTCAATAAACAGATACAAGAGGTCGAGAAACAGGTGGATAAGCTCTCGGGTCTACTAATTAAGCTTAAGGACGCTAATGAGGAAACAAAGTCCGTTACAAAAGCATCCACCATGAAAGTTATCAAGAAGCGGATGGAAAAGGATATCGACGAAGTGGGAAAGATTGCTCGTAATATTAAAGCAAAATTGGAAGCAATAAACAAAGAAAACTTGGCCAATAGACAGAAGCTCGGATGTGAGAAAGGAACAGCCGTTGATCGGGCTAGAACGAACATGACAAATTCCTTAACGAAAAAGTTCAAGGAGATAATGACTGAGTTTCAAATGCTTAGACAAAGAATACAAGACGAATACCGCGAAGTTGTAGAAAGAAGAGTCATGACAGTGACAGGAACAAGACCAGATGAAGATACAATTGACAATCTCATAGAAACCGGAAACAGTGAGCAAATCTTCCAAAATGCGATTCAAGAAATGGGACGGGGCCAGGTTATGAATACAGTGGAAGAAATTCAAGAACGGCATGATGCTGTGAAAGAAATCGAGAAGAAGCTTATGGACCTGCATCAGATATATGTCGATATGGCGGTCTTAGTAGATGCTCAAGGCGAAATTTTAGATAACATAGAAAATCAGGTGACAAATGCAGTGGACCATGTGAGGATGGGAACAGATGCTCTACAAACAGCAAAGAGCTTGCAAAAGAAATCAAGGAAATGCATGATGATTGCTATTATTTTGCTTCTGGTTATAGCAATTATCATTGTACTCTCTATTGTGAAGCCATGGAAGAAGTGA | 846 | 40.07 | MGTRFPRSNSEVGMEAFNKQIQEVEKQVDKLSGLLIKLKDANEETKSVTKASTMKVIKKRMEKDIDEVGKIARNIKAKLEAINKENLANRQKLGCEKGTAVDRARTNMTNSLTKKFKEIMTEFQMLRQRIQDEYREVVERRVMTVTGTRPDEDTIDNLIETGNSEQIFQNAIQEMGRGQVMNTVEEIQERHDAVKEIEKKLMDLHQIYVDMAVLVDAQGEILDNIENQVTNAVDHVRMGTDALQTAKSLQKKSRKCMMIAIILLLVIAIIIVLSIVKPWKK | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32432230 | 32434657 | + | Conep03aG0185400.1 | Cone3ag1346 | 434805 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag1346 | 281 | SMART | tSNARE_6 | 179 | 246 | IPR000727 | - | |
Cone3ag1346 | 281 | Coils | Coil | 14 | 44 | - | - | |
Cone3ag1346 | 281 | SMART | SynN_4 | 9 | 135 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag1346 | 281 | Pfam | Syntaxin | 17 | 219 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag1346 | 281 | Gene3D | - | 9 | 138 | - | - | |
Cone3ag1346 | 281 | CDD | SynN | 14 | 171 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag1346 | 281 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 184 | 246 | IPR000727 | - | |
Cone3ag1346 | 281 | SUPERFAMILY | t-snare proteins | 12 | 239 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone3ag1346 | 281 | FunFam | Syntaxin 132 | 177 | 277 | - | - | |
Cone3ag1346 | 281 | Gene3D | - | 174 | 277 | - | - | |
Cone3ag1346 | 281 | PANTHER | SYNTAXIN | 17 | 265 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone3ag1346 | 281 | CDD | SNARE_syntaxin1-like | 183 | 245 | - | - | |
Cone3ag1346 | 281 | Pfam | SNARE domain | 220 | 272 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0457 | Cone-Chr13:4925873 | Cone3ag1346 | Cone-Chr3:32432230 | 7.42E-110 | dispersed | |
Cone3ag0557 | Cone-Chr3:2748964 | Cone3ag1346 | Cone-Chr3:32432230 | 9.13E-105 | dispersed | |
Cone3ag1346 | Cone-Chr3:32432230 | Cone6ag1632 | Cone-Chr6:12550084 | 1.08E-32 | dispersed | |
Cone1ag0131 | Cone-Chr1:738960 | Cone3ag1346 | Cone-Chr3:32432230 | 1.91E-72 | wgd | |
Cone3ag1346 | Cone-Chr3:32432230 | Cone5ag1736 | Cone-Chr5:12339572 | 2.78E-71 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag1346 | K08486 | - | mdm:103442593 | 449.514 |