Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag1367 | ATGCACAACCTGGAAAGTTCTCAAGCTAGAAGGCAAGGATCTAAGTCAGTAGCCAAGACATTAGCAGCATGGAAAGAATACAACAACCAACTCGATTCTCATAACAGTGAGGCCAAACCAGCCCATAAAATTCCAGCCAAGGGGTCGAAGAAGGGATGTATGAAAGGAAAAGGCGGGCCTGAGAATTCCCGTTGCAGCTTCCGAGGTGTCAGGCAAAGAACATGGGGCAAATGGGTTTCCGAAATCCGGGCCCCAAATGGTGGGGGCCGCCTCTGGTTAGGTACTTTTCCAACCGCCATTGAAGCTGCTCTTGTTTACGACAAAGCTGCTAGGTCCATGTATGGGACTTGTGCCCGGGTCAACTTCTCCAATGTCTCAGCCCCTTGCTTCTTCCCAGAACCTTTTAAGAATTCTTCGGACTCTTCTTCTACCCCAAGAAAAACTCCTTCCAGGTCTTCACCTTCTTCGGGTGAAAACAATACTACACCGGTCAGTTCCGAGTCTGATTTAACATCAGATCACAGTCTAGAAGGTGAATCTTGA | 543 | 48.25 | MHNLESSQARRQGSKSVAKTLAAWKEYNNQLDSHNSEAKPAHKIPAKGSKKGCMKGKGGPENSRCSFRGVRQRTWGKWVSEIRAPNGGGRLWLGTFPTAIEAALVYDKAARSMYGTCARVNFSNVSAPCFFPEPFKNSSDSSSTPRKTPSRSSPSSGENNTTPVSSESDLTSDHSLEGES | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32672418 | 32674452 | + | Conep03aG0187900.1 | Cone3ag1367 | 434826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag1367 | 180 | PRINTS | Ethylene responsive element binding protein signature | 89 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone3ag1367 | 180 | PRINTS | Ethylene responsive element binding protein signature | 67 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone3ag1367 | 180 | CDD | AP2 | 65 | 125 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone3ag1367 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 167 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cone3ag1367 | 180 | SMART | rav1_2 | 66 | 129 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone3ag1367 | 180 | MobiDBLite | consensus disorder prediction | 135 | 180 | - | - | |
Cone3ag1367 | 180 | SUPERFAMILY | DNA-binding domain | 67 | 123 | IPR016177 | GO:0003677(InterPro) | |
Cone3ag1367 | 180 | FunFam | Ethylene-responsive transcription factor 2 | 65 | 124 | - | - | |
Cone3ag1367 | 180 | Gene3D | AP2/ERF domain | 66 | 124 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone3ag1367 | 180 | MobiDBLite | consensus disorder prediction | 135 | 171 | - | - | |
Cone3ag1367 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone3ag1367 | 180 | MobiDBLite | consensus disorder prediction | 31 | 64 | - | - | |
Cone3ag1367 | 180 | Pfam | AP2 domain | 66 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag1642 | Cone-Chr1:57719097 | Cone3ag1367 | Cone-Chr3:32672418 | 1.78E-48 | dispersed | |
Cone3ag1367 | Cone-Chr3:32672418 | Cone5ag0169 | Cone-Chr5:705051 | 6.60E-47 | dispersed | |
Cone10ag1301 | Cone-Chr10:10159450 | Cone3ag1367 | Cone-Chr3:32672418 | 4.40E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45861 | PF00538 | Linker_histone | 2.80E-08 | CL0123 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag1367 | - | - | - | 0.0 |