Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1367 ATGCACAACCTGGAAAGTTCTCAAGCTAGAAGGCAAGGATCTAAGTCAGTAGCCAAGACATTAGCAGCATGGAAAGAATACAACAACCAACTCGATTCTCATAACAGTGAGGCCAAACCAGCCCATAAAATTCCAGCCAAGGGGTCGAAGAAGGGATGTATGAAAGGAAAAGGCGGGCCTGAGAATTCCCGTTGCAGCTTCCGAGGTGTCAGGCAAAGAACATGGGGCAAATGGGTTTCCGAAATCCGGGCCCCAAATGGTGGGGGCCGCCTCTGGTTAGGTACTTTTCCAACCGCCATTGAAGCTGCTCTTGTTTACGACAAAGCTGCTAGGTCCATGTATGGGACTTGTGCCCGGGTCAACTTCTCCAATGTCTCAGCCCCTTGCTTCTTCCCAGAACCTTTTAAGAATTCTTCGGACTCTTCTTCTACCCCAAGAAAAACTCCTTCCAGGTCTTCACCTTCTTCGGGTGAAAACAATACTACACCGGTCAGTTCCGAGTCTGATTTAACATCAGATCACAGTCTAGAAGGTGAATCTTGA 543 48.25 MHNLESSQARRQGSKSVAKTLAAWKEYNNQLDSHNSEAKPAHKIPAKGSKKGCMKGKGGPENSRCSFRGVRQRTWGKWVSEIRAPNGGGRLWLGTFPTAIEAALVYDKAARSMYGTCARVNFSNVSAPCFFPEPFKNSSDSSSTPRKTPSRSSPSSGENNTTPVSSESDLTSDHSLEGES 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32672418 32674452 + Conep03aG0187900.1 Cone3ag1367 434826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1367 180 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag1367 180 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag1367 180 CDD AP2 65 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag1367 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 167 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cone3ag1367 180 SMART rav1_2 66 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag1367 180 MobiDBLite consensus disorder prediction 135 180 - -
Cone3ag1367 180 SUPERFAMILY DNA-binding domain 67 123 IPR016177 GO:0003677(InterPro)
Cone3ag1367 180 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Cone3ag1367 180 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag1367 180 MobiDBLite consensus disorder prediction 135 171 - -
Cone3ag1367 180 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag1367 180 MobiDBLite consensus disorder prediction 31 64 - -
Cone3ag1367 180 Pfam AP2 domain 66 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1642 Cone-Chr1:57719097 Cone3ag1367 Cone-Chr3:32672418 1.78E-48 dispersed
Cone3ag1367 Cone-Chr3:32672418 Cone5ag0169 Cone-Chr5:705051 6.60E-47 dispersed
Cone10ag1301 Cone-Chr10:10159450 Cone3ag1367 Cone-Chr3:32672418 4.40E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45861 PF00538 Linker_histone 2.80E-08 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1367 - - - 0.0