Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1375 ATGGAGTTCGATCTTGAAAACCCATTAACCCACTTCCACCACCTTCACTCCGACTTCTTCCCTTCACTCTTCCTCATCGAATCCGATCACATGCCCTCTCAAAATTACTTTCTTACCCTCCAATCCTCCCATTCCAAGCTCTCTTTCCGGCAAGAAACCATCTCTTTGATCTTACAGTGTTGCGGTAATTTTGACCCCCTTTTGTCTTACCTTGCCATAAATTACCTCGATCGGTTCCTATCTTCTCAAGGAGTTCCGCAATCAAAACCATGGGTCGTAAGGCTTGTTGCAATCTCATGTGTTTCTCTTGCTGCCAAAATGAAACAAACAGATCGCTTTTTTATCTCTGGTTTTCAGAGTGATGGGGGGTTTATATTCGACACACAGACAATACAGAGAATGGAAGTAGTGATTTTAGGAGCATTAGAATGGAGAATGAGATCGATCACTCCTTTCTCTTTCATCTCTTTTTTTATATCTTTCTTCAAGCTCAAAGACCCGCCATTAATGGAAGCTCTCAAAGCTAGAGCTATCGAAATCATCTACAACGCTCAAAATGACATAAAGCTGTTGGAATTTAAGCCATCAGTTGTATCTGCTTCGTCTCTTCTCTCTGCTTCTTGTGAACTCTTCCCTTTGCAATATCCTTGCTTCAGCAAAGCAATCTCCAGTTGTTCCTTTGTAGATACAGAAAGCATGTTGCTCTGCTTCAGTGCGATGCAGGACATAGTAATAAATGAGTACGTCTCTGTGTTTGATGTAAATCAAAGCTTGGTAACACCTGTCAATGTGCTAGACCTTCGTTTTTCGAGCTTCGAAAGTGAAAATATAGATGGTGGTGGTCACGTCAGCAACGAATCACAGAGCGTAGAGGATTGA 879 41.87 MEFDLENPLTHFHHLHSDFFPSLFLIESDHMPSQNYFLTLQSSHSKLSFRQETISLILQCCGNFDPLLSYLAINYLDRFLSSQGVPQSKPWVVRLVAISCVSLAAKMKQTDRFFISGFQSDGGFIFDTQTIQRMEVVILGALEWRMRSITPFSFISFFISFFKLKDPPLMEALKARAIEIIYNAQNDIKLLEFKPSVVSASSLLSASCELFPLQYPCFSKAISSCSFVDTESMLLCFSAMQDIVINEYVSVFDVNQSLVTPVNVLDLRFSSFESENIDGGGHVSNESQSVED 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32742463 32744736 - Conep03aG0188800.1 Cone3ag1375 434834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1375 292 SMART Cyclin_C_2 149 289 IPR004367 -
Cone3ag1375 292 FunFam D6-type cyclin 145 238 - -
Cone3ag1375 292 Pfam Cyclin, C-terminal domain 149 246 IPR004367 -
Cone3ag1375 292 Pfam Cyclin, N-terminal domain 24 147 IPR006671 -
Cone3ag1375 292 SMART cyclin_7 55 140 IPR013763 -
Cone3ag1375 292 SUPERFAMILY Cyclin-like 130 245 IPR036915 -
Cone3ag1375 292 Gene3D - 33 147 - -
Cone3ag1375 292 Gene3D - 23 238 - -
Cone3ag1375 292 PANTHER CYCLINS 25 242 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone3ag1375 292 SUPERFAMILY Cyclin-like 9 146 IPR036915 -
Cone3ag1375 292 FunFam D6-type cyclin 33 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1375 Cone-Chr3:32742463 Cone4ag1308 Cone-Chr4:10767744 2.13E-39 dispersed
Cone10ag1311 Cone-Chr10:10248588 Cone3ag1375 Cone-Chr3:32742463 2.97E-168 wgd
Cone14ag1098 Cone-Chr14:9171459 Cone3ag1375 Cone-Chr3:32742463 2.24E-19 wgd
Cone3ag1375 Cone-Chr3:32742463 Cone8ag1477 Cone-Chr8:11289833 2.76E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1375 K18812 - rcu:8287587 312.383