Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1401 ATGGGCGGTTGCGTTTCGATTAGTAGTAAGAGTTCTTGCAGTAGTGGCACAAGAAGCGATGGAGAAAAAGTTTCTATTTCTCCCACATGCTTGGAGATTGGATTTTGTAGGAAGAAGGGGATAAAGAGAACATTTTCCAGCCACATTGTTGCCTTGCAGCATTTGACCTCTGTATCAAACAGAATTTTCGCAAACGGAAAGAGTCGCACATCGTGCATATTCACACAGCAAGGTCGTAAAGGAATAAACCAGGATGCTATGCTTGTGTGGGAAGATTTTATGCCAGAAGATGCAACGTTTTGCGGTGTATTTGACGGCCATGGCCCACACGGACATCTTGTTGCTCGTAAAGTAAGGGATACCCTCCCAATGTTGCTAGTATCGTCCTTGCGTTCTTCTCAATCAAAGAAAAACCGGTCCAGTACAACTTGTTTTAGGACAAATGTAAATAAACCAAATGGGGCTGATTCAGAGAAAGAAGGTTCAACAGAGGATACACAAAATTCTTTATGGAAGGAAGCTTTCTTGAAGTCATACAAAGCCATGGACAAGGAACTGAGATCACACCCGAATTTAGATTGTTTTTGTAGCGGTAGTACTGCAGTTACTATAGTCAAACAGGGCTCAAATCTTTTCATGGGAAGTATTGGGGATTCTCGTGCAATTCTCGGATCTAAGGACAACAATAATTCCATGGTAGCAATCCAGTTGACCATTGATCTAAAACCTGATTTACCAAGAGAAGCTGAAAGAATTAACCGGTGTAGAGGTAGAGTCTTTGCATTGCAAGATGAGCCTGAAGTGTCAAGAGTATGGTTGCCATTCGACGATGCACCTGGCTTAGCCATGGCCCGGGCATTTGGAGATTTCTGTTTGAAGGAATATGGAGTGATCTCTATACCCGAATTCTCACATCGAACACTTACAGACAGAGATCAATTCATTGTTCTTGCCTCAGACGGGGTTTGGGATGTGTTGAGCAATGAAGAGGTGGTGGAGATAGTGTCCACTTCCACGACACGGTCATCGGCCGCCAGATTGGTGGTTGATGCAGCAGCTCGAGAGTGGAAACTCAAGTACCCAACTTCAAAGATGGATGATTGTGCAGTGGTTTGTATGTTTTTGGATGGGAAAATGGACTCCGAATCCGATTATGATGAGCTAGGTTATTCTTCCGCAACTCTTCAAAGCAATCATTCAGGTAATGTTGTTGAAGCAGATGATGGACAGAAGGTTGAGCCGGCATTACAAAGGAATTACACAGTGAGATCAACGGAAGAAGATGACAGTTACGGGAGATTGGCGGTTGAAGTTCAAGGGGATGTAGAAATGTTATCGGTTGAAGATCAGAGCTGGTCTGGGTTGGAAGGCGTCACGAGAGTGAACTCACTGGTTCAGCTACCAAGATTTTCTGAAGAAAGGCCAATGCCTTGA 1434 43.93 MGGCVSISSKSSCSSGTRSDGEKVSISPTCLEIGFCRKKGIKRTFSSHIVALQHLTSVSNRIFANGKSRTSCIFTQQGRKGINQDAMLVWEDFMPEDATFCGVFDGHGPHGHLVARKVRDTLPMLLVSSLRSSQSKKNRSSTTCFRTNVNKPNGADSEKEGSTEDTQNSLWKEAFLKSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGSIGDSRAILGSKDNNNSMVAIQLTIDLKPDLPREAERINRCRGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDRDQFIVLASDGVWDVLSNEEVVEIVSTSTTRSSAARLVVDAAAREWKLKYPTSKMDDCAVVCMFLDGKMDSESDYDELGYSSATLQSNHSGNVVEADDGQKVEPALQRNYTVRSTEEDDSYGRLAVEVQGDVEMLSVEDQSWSGLEGVTRVNSLVQLPRFSEERPMP 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32875962 32880921 - Conep03aG0191700.1 Cone3ag1401 434860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1401 477 MobiDBLite consensus disorder prediction 133 166 - -
Cone3ag1401 477 Pfam Protein phosphatase 2C 163 353 IPR001932 -
Cone3ag1401 477 SUPERFAMILY PP2C-like 62 377 IPR036457 -
Cone3ag1401 477 ProSiteProfiles PPM-type phosphatase domain profile. 70 375 IPR001932 -
Cone3ag1401 477 Gene3D - 63 383 IPR036457 -
Cone3ag1401 477 PANTHER PROTEIN PHOSPHATASE 71 374 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone3ag1401 477 MobiDBLite consensus disorder prediction 133 156 - -
Cone3ag1401 477 SMART PP2C_4 54 373 IPR001932 -
Cone3ag1401 477 FunFam probable protein phosphatase 2C 52 61 378 - -
Cone3ag1401 477 CDD PP2Cc 76 375 IPR001932 -
Cone3ag1401 477 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1702 Cone-Chr1:57974327 Cone3ag1401 Cone-Chr3:32875962 1.49E-140 dispersed
Cone3ag1401 Cone-Chr3:32875962 Cone8ag1481 Cone-Chr8:11312853 2.92E-239 dispersed
Cone10ag1329 Cone-Chr10:10363256 Cone3ag1401 Cone-Chr3:32875962 1.35e-319 wgd
Cone12ag1441 Cone-Chr12:10420790 Cone3ag1401 Cone-Chr3:32875962 1.39E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1401 - - - 0.0