Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1410 ATGGAGCTCCTCCGTAGCTGCACCTTTATAATCCTTCTCCTAGCTCCTCATCGACTCGTATCATCATCTCATACTCAAACACCTGGGATGGACAAAAATTGGTTCTCAGCCATCGCCACTTGGTACGGGAGCCCTGAAGGAAATGGCAGCAATGGTGGTGCATGCGGGTATGGTGAATTGGTGGACAAGAAGCCGCTAAAGGCCCGGGTGAGTGCTGTGAGCCCATCGCTATTCAAACAAGGTGAAGGGTGCGGTGCGTGTTACAAGGTCAAGTGCGTGGACCGGAACATCTGCTCGAAACGAGCCGTGACTGTAATTATAACCGATGAGTGTCCGGGATGTGGTAATGCAACACATACTCATTTTGATTTGAGTGGGGCCGCCTTTGGCCGGATGTCGCACTCCGGCAGGAAGGAAGAGCTTAGGAACCGTGGTAAACTGGACGTTATTTACCGAAGAACTCCATGCAAATATGGAAACAAGAATCTTGCATTTATTGTGAATGAAGGTTCATCGGAACATTGGCTTTCGCTCATGGTGGTGTACGAGGATGGAGAAGGAGATGTTGGGTCATTGCAAATAAAACAAGCAAATTCGAATGAGTGGCTAGAAATGCGTCATCTATGGGGAGCAAATTGGTGCATAGATAAGGGCCCACTAAAAGCTCCATTTTCAGTGAGGCTAACAACATCATCCTCATCAAAAACTCTCACAGCAATCAATGTCATTCCAAGTAATTGGTCTCCCAAAGCTACTTTCACTTCTGCACTCCATTTCTTATCTTAA 786 47.07 MELLRSCTFIILLLAPHRLVSSSHTQTPGMDKNWFSAIATWYGSPEGNGSNGGACGYGELVDKKPLKARVSAVSPSLFKQGEGCGACYKVKCVDRNICSKRAVTVIITDECPGCGNATHTHFDLSGAAFGRMSHSGRKEELRNRGKLDVIYRRTPCKYGNKNLAFIVNEGSSEHWLSLMVVYEDGEGDVGSLQIKQANSNEWLEMRHLWGANWCIDKGPLKAPFSVRLTTSSSSKTLTAINVIPSNWSPKATFTSALHFLS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32948120 32949353 - Conep03aG0192600.1 Cone3ag1410 434869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1410 261 CDD DPBB_EXPB_N 34 156 - -
Cone3ag1410 261 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576(InterPro)
Cone3ag1410 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Cone3ag1410 261 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Cone3ag1410 261 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cone3ag1410 261 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Cone3ag1410 261 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Cone3ag1410 261 Pfam Lytic transglycolase 71 147 IPR009009 -
Cone3ag1410 261 SMART dpbb_1 70 151 IPR007112 -
Cone3ag1410 261 Gene3D - 17 156 IPR036908 -
Cone3ag1410 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 161 IPR007112 -
Cone3ag1410 261 Pfam Expansin C-terminal domain 164 244 IPR007117 -
Cone3ag1410 261 SUPERFAMILY Barwin-like endoglucanases 30 159 IPR036908 -
Cone3ag1410 261 Gene3D - 157 256 IPR036749 -
Cone3ag1410 261 PRINTS Major pollen allergen Lol pI signature 133 148 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1410 261 PRINTS Major pollen allergen Lol pI signature 72 83 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1410 261 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1410 261 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1410 261 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1410 261 SUPERFAMILY PHL pollen allergen 161 255 IPR036749 -
Cone3ag1410 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 255 IPR007117 -
Cone3ag1410 261 PANTHER EXPANSIN-B3 11 259 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0575 Cone-Chr11:3310570 Cone3ag1410 Cone-Chr3:32948120 6.17E-77 dispersed
Cone18ag0928 Cone-Chr18:6698060 Cone3ag1410 Cone-Chr3:32948120 1.38E-60 dispersed
Cone12ag1452 Cone-Chr12:10458242 Cone3ag1410 Cone-Chr3:32948120 2.13E-125 wgd
Cone3ag1410 Cone-Chr3:32948120 Cone8ag1502 Cone-Chr8:11379574 1.87E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1410 K20628 - csv:101202998 338.961