Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag1420 | ATGGAGTGTAATAACCAAGAAGTAGACTCGAAAAGGCGGTTTTCCAGGACTAAATCGTCAAGGTTAGACCCCATACTGATTTGGGAGAAAGACACATTGAATTGTGGAGATGTAACACTTATGTTGTTTGATAAAGCTAACTATGGTTCGATGAGATCGCATGGTAATGGCGATCATCATAAGATTGAGAGGAAGAAAATAGAGATGATGATTTCGATGAGATCGCATATTAACCATCCTTGTTTGGGAAGGATACCGGTTCGGGCCAATGAAGCTGAGCAGGTTTGTGCTGGATGGCCTGCTTGGTTGGCTCTTGTGGCTAGTGAAGCTATCAAGGGATGGACTCCTAGACGTCCAAATAGCTTTGAGAAGTTGAATAAAATAGGCCAAGGAACTTATGGTAGTGTTTACAAAGCTCGAGATGTTGTTAACGATAAACTCGTGGCATTGAAACGTGTTCGGTTTGACAATCACAACACGGAGAGTATTAAGTTTATGGCAAGAGAAATCCTTATTCTACGCAAACTTGATCATCCAAATGTAATAAAGTTGGAAGGTTTAGTTACTTCACAAACATCTTGCACGCTCTACCTTATCTTCGAGTATATGGAGCATGATCTTACCGGACTGTCTTCACGTAAAGACATTGACTTCACCGAACCTCAAGTCAAGTGTTATATGCAACAACTTCTAAGAGGACTTGATCATTGTCATAGTCTTGGTGTTCTTCATCGAGACATAAAAGGCTCAAATCTTCTCATCGACAATAATGGCATTTTGAAGATAGCCGATTTTGGATTGGCGACGTTTTATGATCCTAATCACCGGAATGTTCCACTGACTAGCCGTGTAGTAACTCTATGGTATCGACCTCCAGAACTTTTACTCGGTGCATCTTTTTATGGTGTTGCTGTGGATTTATGGAGTACCGGTTGCATACTTGGAGAGTTGTATGCCGGCAAGCCTATATTAGCTGGAAAAACTGAGGTTGAACAATTACATAAAATCTTTAAGCTTTGCGGTTCCCCATCAGAGGATTACTGGACTAAATTGCAATTACGACATGCAATGCTGGTGAAGCCTCCGAAACAATATAAAAGATGCCTCAAGGAAGCTTTCAAAGATTTTCCGACTTCTGCTCTGGGGCTTATTGATATCTTACTCTCTATTGATCCGACAGAAAGAGGAACAACAACATCAGCTCTGAAAAACGAGTTTTTTACAACAAGCCCTTTTCCTTGTGATCCTTCAAGCTTGCCAACATATCATCCTAGCAAAGAGATCGATGTGAAATTATGGTATGAAGAAGCATGGAGGTAA | 1320 | 40.76 | MECNNQEVDSKRRFSRTKSSRLDPILIWEKDTLNCGDVTLMLFDKANYGSMRSHGNGDHHKIERKKIEMMISMRSHINHPCLGRIPVRANEAEQVCAGWPAWLALVASEAIKGWTPRRPNSFEKLNKIGQGTYGSVYKARDVVNDKLVALKRVRFDNHNTESIKFMAREILILRKLDHPNVIKLEGLVTSQTSCTLYLIFEYMEHDLTGLSSRKDIDFTEPQVKCYMQQLLRGLDHCHSLGVLHRDIKGSNLLIDNNGILKIADFGLATFYDPNHRNVPLTSRVVTLWYRPPELLLGASFYGVAVDLWSTGCILGELYAGKPILAGKTEVEQLHKIFKLCGSPSEDYWTKLQLRHAMLVKPPKQYKRCLKEAFKDFPTSALGLIDILLSIDPTERGTTTSALKNEFFTTSPFPCDPSSLPTYHPSKEIDVKLWYEEAWR | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32999063 | 33000896 | + | Conep03aG0193700.1 | Cone3ag1420 | 434879 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag1420 | 439 | SMART | serkin_6 | 122 | 407 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone3ag1420 | 439 | FunFam | probable serine/threonine-protein kinase At1g54610 | 109 | 204 | - | - | |
Cone3ag1420 | 439 | Pfam | Protein kinase domain | 122 | 407 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone3ag1420 | 439 | ProSiteProfiles | Protein kinase domain profile. | 122 | 407 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone3ag1420 | 439 | SUPERFAMILY | Protein kinase-like (PK-like) | 116 | 415 | IPR011009 | - | |
Cone3ag1420 | 439 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 437 | - | - | |
Cone3ag1420 | 439 | ProSitePatterns | Protein kinases ATP-binding region signature. | 128 | 151 | IPR017441 | GO:0005524(InterPro) | |
Cone3ag1420 | 439 | Gene3D | Phosphorylase Kinase; domain 1 | 109 | 204 | - | - | |
Cone3ag1420 | 439 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 242 | 254 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone3ag1420 | 439 | PANTHER | CELL DIVISION PROTEIN KINASE | 121 | 407 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cone3ag1420 | 439 | CDD | STKc_CDK9_like | 122 | 407 | - | - | |
Cone3ag1420 | 439 | FunFam | probable serine/threonine-protein kinase At1g54610 | 205 | 439 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag1420 | Cone-Chr3:32999063 | Cone6ag0146 | Cone-Chr6:740829 | 1.92E-191 | dispersed | |
Cone3ag1420 | Cone-Chr3:32999063 | Cone3ag1421 | Cone-Chr3:33002881 | 1.86E-186 | tandem | |
Cone10ag1351 | Cone-Chr10:10524409 | Cone3ag1420 | Cone-Chr3:32999063 | 7.41E-190 | wgd | |
Cone12ag1466 | Cone-Chr12:10498908 | Cone3ag1420 | Cone-Chr3:32999063 | 2.82E-184 | wgd | |
Cone3ag1420 | Cone-Chr3:32999063 | Cone8ag1512 | Cone-Chr8:11426498 | 4.48E-186 | wgd | |
Cone3ag1420 | Cone-Chr3:32999063 | Cone9ag0171 | Cone-Chr9:760275 | 3.78E-194 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82708 | PF00439 | Bromodomain | 1.20E-22 | No_clan | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag1420 | - | - | - | 0.0 |