Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1420 ATGGAGTGTAATAACCAAGAAGTAGACTCGAAAAGGCGGTTTTCCAGGACTAAATCGTCAAGGTTAGACCCCATACTGATTTGGGAGAAAGACACATTGAATTGTGGAGATGTAACACTTATGTTGTTTGATAAAGCTAACTATGGTTCGATGAGATCGCATGGTAATGGCGATCATCATAAGATTGAGAGGAAGAAAATAGAGATGATGATTTCGATGAGATCGCATATTAACCATCCTTGTTTGGGAAGGATACCGGTTCGGGCCAATGAAGCTGAGCAGGTTTGTGCTGGATGGCCTGCTTGGTTGGCTCTTGTGGCTAGTGAAGCTATCAAGGGATGGACTCCTAGACGTCCAAATAGCTTTGAGAAGTTGAATAAAATAGGCCAAGGAACTTATGGTAGTGTTTACAAAGCTCGAGATGTTGTTAACGATAAACTCGTGGCATTGAAACGTGTTCGGTTTGACAATCACAACACGGAGAGTATTAAGTTTATGGCAAGAGAAATCCTTATTCTACGCAAACTTGATCATCCAAATGTAATAAAGTTGGAAGGTTTAGTTACTTCACAAACATCTTGCACGCTCTACCTTATCTTCGAGTATATGGAGCATGATCTTACCGGACTGTCTTCACGTAAAGACATTGACTTCACCGAACCTCAAGTCAAGTGTTATATGCAACAACTTCTAAGAGGACTTGATCATTGTCATAGTCTTGGTGTTCTTCATCGAGACATAAAAGGCTCAAATCTTCTCATCGACAATAATGGCATTTTGAAGATAGCCGATTTTGGATTGGCGACGTTTTATGATCCTAATCACCGGAATGTTCCACTGACTAGCCGTGTAGTAACTCTATGGTATCGACCTCCAGAACTTTTACTCGGTGCATCTTTTTATGGTGTTGCTGTGGATTTATGGAGTACCGGTTGCATACTTGGAGAGTTGTATGCCGGCAAGCCTATATTAGCTGGAAAAACTGAGGTTGAACAATTACATAAAATCTTTAAGCTTTGCGGTTCCCCATCAGAGGATTACTGGACTAAATTGCAATTACGACATGCAATGCTGGTGAAGCCTCCGAAACAATATAAAAGATGCCTCAAGGAAGCTTTCAAAGATTTTCCGACTTCTGCTCTGGGGCTTATTGATATCTTACTCTCTATTGATCCGACAGAAAGAGGAACAACAACATCAGCTCTGAAAAACGAGTTTTTTACAACAAGCCCTTTTCCTTGTGATCCTTCAAGCTTGCCAACATATCATCCTAGCAAAGAGATCGATGTGAAATTATGGTATGAAGAAGCATGGAGGTAA 1320 40.76 MECNNQEVDSKRRFSRTKSSRLDPILIWEKDTLNCGDVTLMLFDKANYGSMRSHGNGDHHKIERKKIEMMISMRSHINHPCLGRIPVRANEAEQVCAGWPAWLALVASEAIKGWTPRRPNSFEKLNKIGQGTYGSVYKARDVVNDKLVALKRVRFDNHNTESIKFMAREILILRKLDHPNVIKLEGLVTSQTSCTLYLIFEYMEHDLTGLSSRKDIDFTEPQVKCYMQQLLRGLDHCHSLGVLHRDIKGSNLLIDNNGILKIADFGLATFYDPNHRNVPLTSRVVTLWYRPPELLLGASFYGVAVDLWSTGCILGELYAGKPILAGKTEVEQLHKIFKLCGSPSEDYWTKLQLRHAMLVKPPKQYKRCLKEAFKDFPTSALGLIDILLSIDPTERGTTTSALKNEFFTTSPFPCDPSSLPTYHPSKEIDVKLWYEEAWR 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32999063 33000896 + Conep03aG0193700.1 Cone3ag1420 434879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1420 439 SMART serkin_6 122 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1420 439 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Cone3ag1420 439 Pfam Protein kinase domain 122 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1420 439 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1420 439 SUPERFAMILY Protein kinase-like (PK-like) 116 415 IPR011009 -
Cone3ag1420 439 Gene3D Transferase(Phosphotransferase) domain 1 205 437 - -
Cone3ag1420 439 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Cone3ag1420 439 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Cone3ag1420 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1420 439 PANTHER CELL DIVISION PROTEIN KINASE 121 407 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone3ag1420 439 CDD STKc_CDK9_like 122 407 - -
Cone3ag1420 439 FunFam probable serine/threonine-protein kinase At1g54610 205 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1420 Cone-Chr3:32999063 Cone6ag0146 Cone-Chr6:740829 1.92E-191 dispersed
Cone3ag1420 Cone-Chr3:32999063 Cone3ag1421 Cone-Chr3:33002881 1.86E-186 tandem
Cone10ag1351 Cone-Chr10:10524409 Cone3ag1420 Cone-Chr3:32999063 7.41E-190 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone3ag1420 Cone-Chr3:32999063 2.82E-184 wgd
Cone3ag1420 Cone-Chr3:32999063 Cone8ag1512 Cone-Chr8:11426498 4.48E-186 wgd
Cone3ag1420 Cone-Chr3:32999063 Cone9ag0171 Cone-Chr9:760275 3.78E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82708 PF00439 Bromodomain 1.20E-22 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1420 - - - 0.0