Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1421 ATGGGTCAAGCATGTCTTAAGCCTTTATCTACTGAAGAAACCCAAGACATCCCGAATATCAACAGATTTCCAACCCTAAAAACAGCTCGTTTGAATTCATCAAAACGACAGGAAGATGTTCGATTGAATGTCTCAAAGAGAACAGAACAGAACATTATTAGGTCGAATTCGGCAAGGTACAGAGAAGAAGGAATCTGCATCAATCCGTCTAGAAAAGAAGAGGGTGTTAGATTGAATTCATTGGGGAGAAGAGGAGGAGAAACTAATGGTCCATCCAAAGCAAAATTGAACGGTAATAGTAATGTTGCCTTGCTTGACAAGAAAGTCAATGTTTCAACTCGGGTTTATGATGATCAGATCGTTGAGAAGAAGAAGAGGGAGAAGATGGGACAGGTTTTTGTTGATTATCCAGGTAAAGTAAGTGTTCCAAAGGCTGTTGAAGCAGAGCTAGTTGCAGCCGGGTGGCCGGCTTGGCTTTCCACTGTAGCAGGTGAAGCAATCAAAGGATGGCTACCAAGGCGAGCTGATACTTTCAAGAAGTTAGAAAAGATAGGGCAAGGGACTTATAGCAGTGTTTACAAGGCTCACGATATAATTCATGACAAACTAGTTGCTTTGAAACGAGTACGGTTTGATAATCTTGATATGGAGAGCGTCAAGTTCATGGCCAGAGAAATCCTTATCCTACGTAGTCTTGATCATCCAAACGTCATTAAATTGGAAGGTTTGGTTACTTCCTCAAAGTCTTGTAGCTTGTACCTTGTTTTCGAGTATATGGAGCATGATCTTTCCGGCCTCGCAACCAATCCCACCATCAAGTTCACTGAATCGCAGGTTAAATGTTTTATGCAACAACTTCTAAGAGGGCTCGATTATTGTCATAGCCACGGTGTTCTTCATCGCGACATAAAGGGTTCGAATCTGCTGATCAATGATAATGGTGTATTGAAGATTGCGGATCTTGGCTTAGCCAGTTTTTTCGATCCTTACAATAGTGCTCCCTTAACAAGCCGTGTAGTAACTCTTTGGTATCGTCCGCCTGAGCTTTTACTTGGAGCTTCCCACTATGGAGTTGCTGTTGACTTATGGAGCACAGGCTGTTTACTAGCTGAGTTGTATAATGGCCAGCCTATCTTACCTGGGAAAACCGAGGTTGAACAACTGCATAAGATATTTAAGCTTTGTGGGTCCCCATCTGAGGATTATTGGAGAAAACTGAAATCGCGTAACTTAACGGTTTTCAAGCCTACACAGCCTTATCAACGATGTGTTGCAGAAACATTTAAGGAATTTCCATCTGCTGCTGTTTCGCTTGTAGATAGATTGCTTTCTATAGATCCTTCACGTCGAGGAACTGCAGCTCTTGCTCTTAAGAGTGAGTTCTTCACAGCTAAACCTTTTGCTTGCGATCCATCGAGTTTGCCTAAATTTCCCCCCAGCAAAGAGATTGATGCAAAATTACGTGAAGGAGGTAGAAGGCTCGAAAAAGTAGGGCACAAGGACCCAAAAATGGATGTAGATGGGAGAAGAGCAAAAGAATCTCAAGATAATGTTGCTCGTAATGCTAATAATGCTCGCTCCAGCGCATCTTTACAGAAAATAAAAGGGTATTCAAATTCACTGAGCCGGAGAGAACAGGTCAACCCTCGTCAGGAAGAATCCGGTTCCGGTTTTCTAATAGGCCTGCATAAACAAATATCACAAGCTGCAAAAGAATCGAACAGAGGCTCCCACAGGACATCCTTCTCTGGCCCACTAGTACCCAGCCCAACATGGAACAAATCCGTAAAGGAATTCGATGATCCTACAAGGGTGCCGAACCAGGCGGTTAACTTGACAAAATTGTCTGGTCTAGTAGCAACTCGGATCATTACATCTGAAGCATGCCGAGATTATAAGCCCGGCCCATCACAGAGAGAGGCTTTGCATAATAATGAGTTGGAGGGGGCTAGAAAGCAAGATCGAAAACGTTACACTCAGAGAGTTGCAGATTCTTATCAGATTGATCATAATGGGAAAATTTTGGTTAGAGATCCAACTATGTATGGTACAAGAGGAAGGAAGATTTATTTGTCCGGTCCACTTCTCGGGCCATCAAACAATGTGGAGAAGATGCTGGAAGACCATGACTGTCGGATCCAAGAGTATAGTCGACAAGCACGATACGGGAAGCTTAACACTCAGATTAAGCAAGGACATGGAGCTGGACTATAA 2214 43.04 MGQACLKPLSTEETQDIPNINRFPTLKTARLNSSKRQEDVRLNVSKRTEQNIIRSNSARYREEGICINPSRKEEGVRLNSLGRRGGETNGPSKAKLNGNSNVALLDKKVNVSTRVYDDQIVEKKKREKMGQVFVDYPGKVSVPKAVEAELVAAGWPAWLSTVAGEAIKGWLPRRADTFKKLEKIGQGTYSSVYKAHDIIHDKLVALKRVRFDNLDMESVKFMAREILILRSLDHPNVIKLEGLVTSSKSCSLYLVFEYMEHDLSGLATNPTIKFTESQVKCFMQQLLRGLDYCHSHGVLHRDIKGSNLLINDNGVLKIADLGLASFFDPYNSAPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCLLAELYNGQPILPGKTEVEQLHKIFKLCGSPSEDYWRKLKSRNLTVFKPTQPYQRCVAETFKEFPSAAVSLVDRLLSIDPSRRGTAALALKSEFFTAKPFACDPSSLPKFPPSKEIDAKLREGGRRLEKVGHKDPKMDVDGRRAKESQDNVARNANNARSSASLQKIKGYSNSLSRREQVNPRQEESGSGFLIGLHKQISQAAKESNRGSHRTSFSGPLVPSPTWNKSVKEFDDPTRVPNQAVNLTKLSGLVATRIITSEACRDYKPGPSQREALHNNELEGARKQDRKRYTQRVADSYQIDHNGKILVRDPTMYGTRGRKIYLSGPLLGPSNNVEKMLEDHDCRIQEYSRQARYGKLNTQIKQGHGAGL 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33002881 33008203 + Conep03aG0193900.1 Cone3ag1421 434880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1421 737 MobiDBLite consensus disorder prediction 517 545 - -
Cone3ag1421 737 MobiDBLite consensus disorder prediction 488 589 - -
Cone3ag1421 737 Pfam Protein kinase domain 178 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1421 737 PANTHER CELL DIVISION PROTEIN KINASE 178 462 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone3ag1421 737 MobiDBLite consensus disorder prediction 488 516 - -
Cone3ag1421 737 Gene3D Transferase(Phosphotransferase) domain 1 261 499 - -
Cone3ag1421 737 MobiDBLite consensus disorder prediction 567 589 - -
Cone3ag1421 737 MobiDBLite consensus disorder prediction 630 658 - -
Cone3ag1421 737 SUPERFAMILY Protein kinase-like (PK-like) 172 467 IPR011009 -
Cone3ag1421 737 ProSiteProfiles Protein kinase domain profile. 178 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1421 737 MobiDBLite consensus disorder prediction 644 658 - -
Cone3ag1421 737 SMART serkin_6 178 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1421 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1421 737 Coils Coil 699 719 - -
Cone3ag1421 737 Gene3D Phosphorylase Kinase; domain 1 165 260 - -
Cone3ag1421 737 CDD STKc_CDK9_like 178 462 - -
Cone3ag1421 737 FunFam probable serine/threonine-protein kinase At1g54610 165 260 - -
Cone3ag1421 737 FunFam probable serine/threonine-protein kinase At1g54610 261 501 - -
Cone3ag1421 737 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1351 Cone-Chr10:10524409 Cone3ag1421 Cone-Chr3:33002881 0 dispersed
Cone12ag1466 Cone-Chr12:10498908 Cone3ag1421 Cone-Chr3:33002881 2.37E-219 dispersed
Cone3ag1421 Cone-Chr3:33002881 Cone9ag0171 Cone-Chr9:760275 1.83E-231 dispersed
Cone3ag1420 Cone-Chr3:32999063 Cone3ag1421 Cone-Chr3:33002881 1.86E-186 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82709 PF00439 Bromodomain 1.20E-22 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1421 - - - 0.0