Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1431 ATGGGCACAATTTGTGCTGAGCAACACAAGTTCCACCCTTCTCACCAATTCCTCCCATCCAAAAAAACCCTCCTCCTCAAGGACATCAACATCCCACCTAGGAAACTCCTCGGGCGACACCAACACAGCGGTCGCGGCGACGAAAACCCCGACATGTTCTCCGGATCTTCCGATTCACCCCGCTTCTCTTTTTCGGAGGATGTGCTTTTGCAAAAGTTCCTATCTTATAAGAATAGCCCTATGAGTGATGGCGATAATGGTAGCAACGCTGCGGATCATCCTCATAATGACGAGGAAAGTGATGATGAGGACTTGTACTCTTCCGACAATTTCAGGATGTATGAGTTTAAGGTCCGTAGATGTACTCGGAGCCGTAGTCACGATTGGACCGACTGCCCTTTTGCTCATCCGGGGGAAAAGGCCCGAAGGCGGGATCCGCGTCGGTTACATTATTCCGGGACTGTTTGTCCTGATTTTCGCCGTGGTGGATGTAGCCGTGGTGATTGTTGTGAGTTTGCACATGGTGTTTTCGAGTGCTGGCTTCATCCGGCTAGGTATCGGACGGAGGCATGCAAGGACGGAAAAAACTGTAAGAGAAAGGTCTGTTTCTTCGCGCACACTCCCAAACAACTTAGGATTTTGCCGGTGAATGGTTCCGGTCAAAGCTCTTGCGCTTCCTCTTCTTCCTCCCACGAGATTTCAAGCAAGAAGAAGACTAGTAACTCAAACAACTGTTGTTTATTTTGTCGCTGCGGGACGAATTCGACATCGTCACCAACCTCTACCCTTCTGGGGATGTCTCATTTCTCTCCACCACTTTCTCCACCTCTATCTCCGGAAAAACCAGGTTCTCTGAACGGGTTTTCCCCGGTTTCAAGGTATAATGCGAAGGATCAATCGAAGTTGAGTGTGTTGACCGAGCTCGTGAGCTCCTTGGAGGCTATGAATTTCAATGATGTTAATGGGTCTCCCACCGTTAATGAAGCTCCTCACTTCGGGTTTAACCCTAAAAAGGGTATGAATTTGCAATGGGTCAATGATGACTTCAATAATCACAAACAATTCGTTCTTTCACCTTCAAGTAGTAGTACTACTACCCAAAGTGCTTCTTCTCGGGTGACTCGGGCCTCATGTTTCGATGACGGTTTTCCGAGCAAGGGCCATGTTAACAATGATGATCAAAACGACCCGGATCTCGGATGGGTCAATGATTTACTCATGTAA 1224 48.04 MGTICAEQHKFHPSHQFLPSKKTLLLKDINIPPRKLLGRHQHSGRGDENPDMFSGSSDSPRFSFSEDVLLQKFLSYKNSPMSDGDNGSNAADHPHNDEESDDEDLYSSDNFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRLHYSGTVCPDFRRGGCSRGDCCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVNGSGQSSCASSSSSHEISSKKKTSNSNNCCLFCRCGTNSTSSPTSTLLGMSHFSPPLSPPLSPEKPGSLNGFSPVSRYNAKDQSKLSVLTELVSSLEAMNFNDVNGSPTVNEAPHFGFNPKKGMNLQWVNDDFNNHKQFVLSPSSSSTTTQSASSRVTRASCFDDGFPSKGHVNNDDQNDPDLGWVNDLLM 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33072732 33074248 + Conep03aG0194900.1 Cone3ag1431 434890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1431 407 ProSiteProfiles Zinc finger C3H1-type profile. 151 177 IPR000571 GO:0046872(InterPro)
Cone3ag1431 407 Gene3D - 147 218 - -
Cone3ag1431 407 FunFam Zinc finger CCCH domain-containing protein 66 108 176 - -
Cone3ag1431 407 MobiDBLite consensus disorder prediction 79 105 - -
Cone3ag1431 407 MobiDBLite consensus disorder prediction 35 60 - -
Cone3ag1431 407 SMART c3hfinal6 185 208 IPR000571 GO:0046872(InterPro)
Cone3ag1431 407 SMART c3hfinal6 150 176 IPR000571 GO:0046872(InterPro)
Cone3ag1431 407 PANTHER UNKEMPT FAMILY MEMBER 67 377 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1431 Cone-Chr3:33072732 Cone4ag0778 Cone-Chr4:4585632 4.58E-66 dispersed
Cone10ag1360 Cone-Chr10:10597164 Cone3ag1431 Cone-Chr3:33072732 1.50E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45868 PF01031 Dynamin_M 7.40E-97 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1431 K23047 - mtr:25487687 374.4