Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1470 ATGCGTCTGTTTCACTTCAACGACATAGCTCTGAAGTCCCAGAATCTAACTGGAATTGTCCCACCTGAGTTTTCCCAGCTACGCCACCTCAGACTACTTGATCTTAGTCGAAACCTGCTTACTGGGTTTATCCCTAATCAATGGGCTACCATGCAGTTGGGCGAACTCTCTCTTATGGGGAACAGATTGTCTGGTCCATTCCCAAAAGTTCTCACCAAAATTACCACCCTCAGAAACCTGAGCATCGAAGGAAACTTCTTTTATGGACCGATTCCGCCAGAGATTGGAAATTTGATCAATTTACAAAAACTGATTATATCGTCAAATGCTTTCACAGGAGAATTGCCTGTCGCCCTTGCCAAGTTGATCAACTTAGATGATATGAGGATAAGTGACAACAATTTCTCTGGAAAGATACCTGATTTCATCAGTAATTGGACAACAATTGGAAAACTGCATATGGGGGGTTGCTCTCTTGAAGGGCCCATACCTTCAAGCATTGCAGCATTAACAAGCCTTAGCGATCTGAGAATAACTGACCTAAAAGGAGGAAAGTCTAGTTTCCCACCATTGAGTAATATGAAATCCATAAAGACATTGATATTGAGGAAGTGCAATATTCATGGAGAGATTCCCTCCTATATTGGGGATATGGATAAACTAAAAAACCTAGACCTAAGCTTTAACAGCTTAACTGGTAAGATTCCTGGATCTTTTGACGGATCGACTAAATTAGAATTCCTGTATTTGACTGCGAACAAGCTAACAGGATCTGTACCTAGATGGAGCCAAGAAAGAAGCAAACAAGTGGATCTCTCTTATAATAATTTCACTTGGGATAGTTTAGGTCCTACTGACTGTTCTGTGGGTACTCTAAACATGGTGGAGAGCTACTCTTCTTCAAACGAAATAAAAATAGGTTCCTGCTTAAAAAGGAATTATCCATGTAATGCACTTGGTGGTCCGAAACATTACTCCCTATACATCAATTGTGGCGGCGAAGAAGTAGTTATTAACAATACTAAGTATGAAGCCGATAAAGACCATATAGGTGCTGCAATGTTTTACTCGAATGAGAAATGGGCAGTCGCCAGTACAGGAAACTTTATGGACGATGATGCTGCTTCAGACAGATACATCATAAGCAATACATCTGCATTGAAAAATGTATCCAGGCTCTACTCAAAACTGTACAGAACTGGACGAGTTTCTCCCCTCTCTCTCACATACTATGGACTGTGTCTAATCAATAATAATTACACTGTTCGACTCCACTTTGCTGAGATTTTATTCATAAACGACAGTTCGTTGAACAGCCTTGGGAGACGTATATTTGACGTGTACATCCAGGATGAATTGGTCCTGAAAGATTTCAATATAGAAGATGAAGCTGACGGTACTGGTATGCCCATTATCAAAACATTCCCCGCTACTGTCACTAGTCATACTTTGAAGATCCACTTTTACTGGGCTGGAAAAGGGACTACTGGAATTCCACTTCGCGGAAATTACGGTCCACTAATATCAGCCATATCAGTAGACCCTAAATTTAAACCTCCATCAGAAGATGGAAAGAAGAATACTATCGTGATAATTATTGGGTCGGCGGCTACAGCATTTTTTCTCGGCCTGGTGGTCCTAGCTATCATGAGTTATAAAGGCTGTCTAGGAGGCAAAGCCTCTACAGATAAAGAACTCAGAGGAATAGATCTGCAAACAGGACTGTTTACATTAAGACAGATCAAGACTGCCACGAAGAATTTCGATGCTGCAAACAAAGTTGGAGAAGGCGGTTTTGGTGCTGTTTATAAGGGTCTCTTATCAGATGGCATGGTGATTGCAGTGAAGCAACTCTCTTCAAAATCGAAGCAAGGAAACCGAGAATTCTTGAATGAAATAGGCATGGTATCTGCTCTACAACATCCAAATCTAGTTAAGCTTTATGGGTGTTGTGTTGAAGGGAACCAGTTACTACTCATCTATGAATACATGGAAAATAACTGCCTATCACGTGCTCTTTTCGGGAAGGATAAAATATGTACAGTAAAACTGGACTGGCCTACAAGGCAGAAAATCTGCTTAGGCATTGCCAGAGGCCTGGCCTATCTCCATGAAGAATCCAGTATAAAAATTGTACACAGAGATATCAAGACAAGTAATGTGTTACTTGACAAGGATTTCAATGCTAAAATTTCCGATTTCGGTTTGGCTAAGCTGAATGAAGATGACAATACCCACATCAGCACCCGTATTGCTGGAACTATAGGTTACATGGCTCCAGAATATGCAATGCGTGGTTACTTGACGAACAAAGCCGATGTGTATAGCTTCGGAGTTGTCGCATTGGAAATTGTTAGCGGAAAGAGCAACACAAATTACATGCCTAATGAAGAGTTCGTCTACCTTCTCGATTGGGCTTATGTTTTGCAAGAGAGAGGTAATTTATTGGAGTTGATAGATCCATCATTGGGTTCAGAATATTCATCACAAGAAGCAATGGTGATGCTAAATGTAGCTCTCTTATGCACCAATGCATCTCCTACTCTTAGGCCTACTATGTCCCAAGTAGTAAGCATGCTTGAAGGCAGAACTTCGGTTTGGGATTTACTTTCTGATCCAGGATTTTCAGCCGTTACTTCAAAATACAAGGCCATAAGGAACCACTTTTGGCAGCAACCGAGCCAGACCCATAGTATGTCACTGAACGCCTATGATCTTCCTACGGATTCATCAGATTCGTATAATGTAACTAAAGTGAAAGACCATCTTATGAGAGTCAGTTTGGTTGAATCTGAGGAGTAA 2802 40.97 MRLFHFNDIALKSQNLTGIVPPEFSQLRHLRLLDLSRNLLTGFIPNQWATMQLGELSLMGNRLSGPFPKVLTKITTLRNLSIEGNFFYGPIPPEIGNLINLQKLIISSNAFTGELPVALAKLINLDDMRISDNNFSGKIPDFISNWTTIGKLHMGGCSLEGPIPSSIAALTSLSDLRITDLKGGKSSFPPLSNMKSIKTLILRKCNIHGEIPSYIGDMDKLKNLDLSFNSLTGKIPGSFDGSTKLEFLYLTANKLTGSVPRWSQERSKQVDLSYNNFTWDSLGPTDCSVGTLNMVESYSSSNEIKIGSCLKRNYPCNALGGPKHYSLYINCGGEEVVINNTKYEADKDHIGAAMFYSNEKWAVASTGNFMDDDAASDRYIISNTSALKNVSRLYSKLYRTGRVSPLSLTYYGLCLINNNYTVRLHFAEILFINDSSLNSLGRRIFDVYIQDELVLKDFNIEDEADGTGMPIIKTFPATVTSHTLKIHFYWAGKGTTGIPLRGNYGPLISAISVDPKFKPPSEDGKKNTIVIIIGSAATAFFLGLVVLAIMSYKGCLGGKASTDKELRGIDLQTGLFTLRQIKTATKNFDAANKVGEGGFGAVYKGLLSDGMVIAVKQLSSKSKQGNREFLNEIGMVSALQHPNLVKLYGCCVEGNQLLLIYEYMENNCLSRALFGKDKICTVKLDWPTRQKICLGIARGLAYLHEESSIKIVHRDIKTSNVLLDKDFNAKISDFGLAKLNEDDNTHISTRIAGTIGYMAPEYAMRGYLTNKADVYSFGVVALEIVSGKSNTNYMPNEEFVYLLDWAYVLQERGNLLELIDPSLGSEYSSQEAMVMLNVALLCTNASPTLRPTMSQVVSMLEGRTSVWDLLSDPGFSAVTSKYKAIRNHFWQQPSQTHSMSLNAYDLPTDSSDSYNVTKVKDHLMRVSLVESEE 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33310787 33318219 + Conep03aG0198800.1 Cone3ag1470 434929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1470 933 Pfam Malectin domain 326 511 IPR021720 -
Cone3ag1470 933 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 557 663 - -
Cone3ag1470 933 SUPERFAMILY L domain-like 10 278 - -
Cone3ag1470 933 Pfam Protein tyrosine and serine/threonine kinase 591 858 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1470 933 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Cone3ag1470 933 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515(InterPro)
Cone3ag1470 933 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 324 516 - -
Cone3ag1470 933 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 279 - -
Cone3ag1470 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1470 933 Gene3D Ribonuclease Inhibitor 2 179 IPR032675 -
Cone3ag1470 933 SUPERFAMILY Protein kinase-like (PK-like) 573 864 IPR011009 -
Cone3ag1470 933 Gene3D - 323 515 - -
Cone3ag1470 933 Gene3D Phosphorylase Kinase; domain 1 558 663 - -
Cone3ag1470 933 Pfam Leucine rich repeat 196 255 IPR001611 GO:0005515(InterPro)
Cone3ag1470 933 Pfam Leucine rich repeat 9 63 IPR001611 GO:0005515(InterPro)
Cone3ag1470 933 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 878 IPR051824 -
Cone3ag1470 933 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 115 182 - -
Cone3ag1470 933 CDD STKc_IRAK 594 862 - -
Cone3ag1470 933 Gene3D Transferase(Phosphotransferase) domain 1 664 868 - -
Cone3ag1470 933 SMART serkin_6 588 860 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1470 933 ProSitePatterns Protein kinases ATP-binding region signature. 594 616 IPR017441 GO:0005524(InterPro)
Cone3ag1470 933 Gene3D Ribonuclease Inhibitor 180 288 IPR032675 -
Cone3ag1470 933 ProSiteProfiles Protein kinase domain profile. 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1470 933 FunFam Putative LRR receptor-like serine/threonine-protein kinase 664 872 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1009 Cone-Chr15:8168530 Cone3ag1470 Cone-Chr3:33310787 1.03E-201 dispersed
Cone3ag1470 Cone-Chr3:33310787 Cone9ag0235 Cone-Chr9:991865 9.11E-245 dispersed
Cone9ag0938 Cone-Chr9:4639911 Cone3ag1470 Cone-Chr3:33310787 6.10E-52 dispersed
Cone10ag1407 Cone-Chr10:10929164 Cone3ag1470 Cone-Chr3:33310787 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82711 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1470 - - - 0.0