Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1487 ATGTCGTCTGGCTCTTTGAATGAAGAATTATCGAAGAAGACTTTGGTTTTAGGCTTGTCCCTATGGGTATTGATCTGCATATGCTTTGCTGCATTTATAGTCTTGATTCTTTGTTTATTATCCATATGGGTCATGTCCCGACGAAAATCTAAAAGATCCATTGACGGATATCCCCTCTCTCAAATCCCGATCATATCCAAGGACATAAAAGTTGACCGGGTAGGGACTCAAGCTAACCGAGATCATCCTGAAAGCTTATTTCTTTCAGTCCTTGATAAATCAGGTGATAAGAATTCAGACAAGATGTATGCTCATTTGGGTATGAGCAAATCAAGTGATCCGGACAATATGAGTCAATGTAGCTCGGTTTATCAAATAGAGAGGGGCGGCAGTTCACATTCGGGCGAAGAAGGAAGCTCCGGAACGGGACGGAAGCAATCTACATTGTCATATGGAGGAGGGCATGGAGGGCTTGTGACGGCTTCTCCTCTAGTTGGTTTGCCGGAATTTTCACATCTTGGGTGGGGCCATTGGTTCACACTTAGGGATTTGGAATTTGCGACGAGCCGCTTCGCCGCAGAGAATGTGCTTGGTGAGGGGGGGTATGGAGTTGTTTACAAGGGAAGACTTATTAATGGCACTGAAGTGGCAGTGAAGAAACTACTTAATAATTTGGGACAGGCGGAGAAAGAATTTCGAGTTGAAGTTGAGGCCATTGGTCATGTTCGACATAAGAATCTCGTTCGGCTTCTGGGTTATTGCATAGAAGGAGTTCATAGGATGCTAGTTTATGAATATGTGAACAATGGAAACTTGGAACAATGGTTACACGGAGCTATGCGCCAACACGGAACCCTTACATGGGAGGCCCGCACAAAGGTGCTTCTTGGCACTGCTAAAGCGCTAGCATATTTACACGAAGCAATAGAGCCGAAAGTGGTTCATAGAGACATAAAGTCAAGTAACATCTTGATTGATGATGAGTTTAATGCCAAGGTTTCTGATTTTGGATTGGCCAAACTCTTGGACTCGGGTGAAAGTCATATCACAACTAGAGTGATGGGAACATTTGGTTACGTGGCACCCGAATATGCAAATACGGGTTTGTTAAATGAGAGGAGCGACATTTACAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGAGACCCTGTGGACTATGGCCGACCGGCTAATGAGGTTAATCTTGTGGAGTGGCTTAAGGTGATGGTGGGGACGGGAAGAGCTGAGGAAGTTATGGACCCGGAAGTTGAAGTTAAACCGACTACACGGGCTTTAAAACGAGCCCTTCTAGTTGCACTTAAGTGCATTGATCCCGAAGCAGGCAAGAGACCTAAAATGAGTCAAGTTGTTAGAATGCTTGAAGCCGATGAATATCCCGCACGTGAGGATCGAAGAAATAGAAAGAGCCGAACAGTGAGCATGGAAATGGAAGTGATGAAGGAAATTTCGGGTTCGGAGGATATAGAAAGCAAGCCAGGAGAAGGGGAGTCAGAGATTCATACTTCTGAGACAACTCATTGA 1548 44.83 MSSGSLNEELSKKTLVLGLSLWVLICICFAAFIVLILCLLSIWVMSRRKSKRSIDGYPLSQIPIISKDIKVDRVGTQANRDHPESLFLSVLDKSGDKNSDKMYAHLGMSKSSDPDNMSQCSSVYQIERGGSSHSGEEGSSGTGRKQSTLSYGGGHGGLVTASPLVGLPEFSHLGWGHWFTLRDLEFATSRFAAENVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARTKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTGRAEEVMDPEVEVKPTTRALKRALLVALKCIDPEAGKRPKMSQVVRMLEADEYPAREDRRNRKSRTVSMEMEVMKEISGSEDIESKPGEGESEIHTSETTH 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33526021 33529943 + Conep03aG0200500.1 Cone3ag1487 434946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1487 515 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524(InterPro)
Cone3ag1487 515 SMART serkin_6 191 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1487 515 CDD STKc_IRAK 197 463 - -
Cone3ag1487 515 SUPERFAMILY Protein kinase-like (PK-like) 175 465 IPR011009 -
Cone3ag1487 515 Coils Coil 211 231 - -
Cone3ag1487 515 Pfam Protein kinase domain 193 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1487 515 MobiDBLite consensus disorder prediction 468 515 - -
Cone3ag1487 515 FunFam Putative receptor-like protein kinase 173 266 - -
Cone3ag1487 515 MobiDBLite consensus disorder prediction 128 151 - -
Cone3ag1487 515 ProSiteProfiles Protein kinase domain profile. 191 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1487 515 PANTHER OS01G0323000 PROTEIN 4 494 IPR052232 -
Cone3ag1487 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1487 515 MobiDBLite consensus disorder prediction 128 149 - -
Cone3ag1487 515 Gene3D Transferase(Phosphotransferase) domain 1 267 481 - -
Cone3ag1487 515 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Cone3ag1487 515 FunFam Putative receptor-like serine/threonine-protein kinase 267 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0838 Cone-Chr10:4250465 Cone3ag1487 Cone-Chr3:33526021 2.03E-207 dispersed
Cone10ag1425 Cone-Chr10:11022006 Cone3ag1487 Cone-Chr3:33526021 7.36E-179 dispersed
Cone1ag1578 Cone-Chr1:57478311 Cone3ag1487 Cone-Chr3:33526021 2.26E-224 dispersed
Cone3ag1487 Cone-Chr3:33526021 Cone5ag0098 Cone-Chr5:454772 3.67E-228 dispersed
Cone3ag1487 Cone-Chr3:33526021 Cone6ag0157 Cone-Chr6:780724 3.83E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82712 PF15805 SCNM1_acidic 4.40E-14 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1487 - - - 0.0