Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag1500 | ATGGATCAGTCGGAGCAGCAACAGCAGCCCATGGGGGGTCCCGGCCCAGGCCTAATGGCAGCATACTCTTCCCCTCCATACCAAACCAGTCCCATGGTAACTCCTGGAACCACCACATCTGCTCCAAACACTTTCTCCAACTCGCCACATCAGCTCGTGTACCAACAAGCCCAACACTTCCACCATCAACAGCAGCAACAACAACAGCAGCAGCTCCAAATGTTCTGGGCCAACCAAATGCAAGAAATCGAGCAAACAACGGACTTCAAGAACCACAGCCTCCCCCTGGCCCGCATCAAGAAAATCATGAAAGCTGACGAAGATGTCCGTATGATCTCAGCAGAAGCTCCCGTCATTTTCGCAAAGGCATGCGAAATGTTCATCCTAGAGTTGACTCTACGCTCTTGGATTCATACCGAAGAGAACAAGAGGCGAACTCTACAGAAGAATGATATTGCTGCTGCAATTTCTAGGACCGACGTGTTTGACTTTTTGGTCGATATTATACCTAGAGACGAGTTGAAAGAGGAGGGGCTTGGAGTTACGAAAGCCACTATTCCCATGGTTGGTTCTCCGAATGATCTTCCTCCGTATTACTATGTCCCGCCACCTCAGCATGCTGTGGGGCCCACGGGTATGATTATGGGGAAGCCTGTGGTGGATCAAGGGACGATGTATGCTGCTACTGGTTCTCAGCAGCAACCAGTACAGCCGCCTATGGCTTTTATGCTATGGCCGCAGCAGCAGAAGCACCAGCAATCCCAACCGCACTAA | 774 | 51.03 | MDQSEQQQQPMGGPGPGLMAAYSSPPYQTSPMVTPGTTTSAPNTFSNSPHQLVYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPMVGSPNDLPPYYYVPPPQHAVGPTGMIMGKPVVDQGTMYAATGSQQQPVQPPMAFMLWPQQQKHQQSQPH | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 33585649 | 33586422 | - | Conep03aG0201800.1 | Cone3ag1500 | 434959 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag1500 | 257 | Gene3D | Histone, subunit A | 54 | 171 | IPR009072 | GO:0046982(InterPro) | |
| Cone3ag1500 | 257 | FunFam | Nuclear transcription factor Y subunit gamma | 59 | 171 | - | - | |
| Cone3ag1500 | 257 | Pfam | Core histone H2A/H2B/H3/H4 | 46 | 156 | IPR007125 | GO:0003677(InterPro) | |
| Cone3ag1500 | 257 | SUPERFAMILY | Histone-fold | 49 | 165 | IPR009072 | GO:0046982(InterPro) | |
| Cone3ag1500 | 257 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 66 | 194 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Cone3ag1500 | 257 | MobiDBLite | consensus disorder prediction | 23 | 46 | - | - | |
| Cone3ag1500 | 257 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0228 | Cone-Chr13:1485636 | Cone3ag1500 | Cone-Chr3:33585649 | 2.87E-69 | dispersed | |
| Cone19ag0213 | Cone-Chr19:1343629 | Cone3ag1500 | Cone-Chr3:33585649 | 4.06E-69 | dispersed | |
| Cone3ag0756 | Cone-Chr3:3923223 | Cone3ag1500 | Cone-Chr3:33585649 | 8.69E-69 | dispersed | |
| Cone6ag0767 | Cone-Chr6:3911492 | Cone3ag1500 | Cone-Chr3:33585649 | 3.15E-29 | transposed | |
| Cone10ag1432 | Cone-Chr10:11150110 | Cone3ag1500 | Cone-Chr3:33585649 | 4.44E-155 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45878 | PF02362 | B3 | 6.40E-17 | CL0405 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag1500 | K08066 | - | rcu:8260315 | 328.946 |