Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1500 ATGGATCAGTCGGAGCAGCAACAGCAGCCCATGGGGGGTCCCGGCCCAGGCCTAATGGCAGCATACTCTTCCCCTCCATACCAAACCAGTCCCATGGTAACTCCTGGAACCACCACATCTGCTCCAAACACTTTCTCCAACTCGCCACATCAGCTCGTGTACCAACAAGCCCAACACTTCCACCATCAACAGCAGCAACAACAACAGCAGCAGCTCCAAATGTTCTGGGCCAACCAAATGCAAGAAATCGAGCAAACAACGGACTTCAAGAACCACAGCCTCCCCCTGGCCCGCATCAAGAAAATCATGAAAGCTGACGAAGATGTCCGTATGATCTCAGCAGAAGCTCCCGTCATTTTCGCAAAGGCATGCGAAATGTTCATCCTAGAGTTGACTCTACGCTCTTGGATTCATACCGAAGAGAACAAGAGGCGAACTCTACAGAAGAATGATATTGCTGCTGCAATTTCTAGGACCGACGTGTTTGACTTTTTGGTCGATATTATACCTAGAGACGAGTTGAAAGAGGAGGGGCTTGGAGTTACGAAAGCCACTATTCCCATGGTTGGTTCTCCGAATGATCTTCCTCCGTATTACTATGTCCCGCCACCTCAGCATGCTGTGGGGCCCACGGGTATGATTATGGGGAAGCCTGTGGTGGATCAAGGGACGATGTATGCTGCTACTGGTTCTCAGCAGCAACCAGTACAGCCGCCTATGGCTTTTATGCTATGGCCGCAGCAGCAGAAGCACCAGCAATCCCAACCGCACTAA 774 51.03 MDQSEQQQQPMGGPGPGLMAAYSSPPYQTSPMVTPGTTTSAPNTFSNSPHQLVYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPMVGSPNDLPPYYYVPPPQHAVGPTGMIMGKPVVDQGTMYAATGSQQQPVQPPMAFMLWPQQQKHQQSQPH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33585649 33586422 - Conep03aG0201800.1 Cone3ag1500 434959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1500 257 Gene3D Histone, subunit A 54 171 IPR009072 GO:0046982(InterPro)
Cone3ag1500 257 FunFam Nuclear transcription factor Y subunit gamma 59 171 - -
Cone3ag1500 257 Pfam Core histone H2A/H2B/H3/H4 46 156 IPR007125 GO:0003677(InterPro)
Cone3ag1500 257 SUPERFAMILY Histone-fold 49 165 IPR009072 GO:0046982(InterPro)
Cone3ag1500 257 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 194 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone3ag1500 257 MobiDBLite consensus disorder prediction 23 46 - -
Cone3ag1500 257 MobiDBLite consensus disorder prediction 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1500 K08066 - - rcu:8260315 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0228 Cone-Chr13:1485636 Cone3ag1500 Cone-Chr3:33585649 2.87E-69 dispersed
Cone19ag0213 Cone-Chr19:1343629 Cone3ag1500 Cone-Chr3:33585649 4.06E-69 dispersed
Cone3ag0756 Cone-Chr3:3923223 Cone3ag1500 Cone-Chr3:33585649 8.69E-69 dispersed
Cone6ag0767 Cone-Chr6:3911492 Cone3ag1500 Cone-Chr3:33585649 3.15E-29 transposed
Cone10ag1432 Cone-Chr10:11150110 Cone3ag1500 Cone-Chr3:33585649 4.44E-155 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.6e-88 323.2
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.7e-88 322.4
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 9.8e-54 207.6
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.2 3.7e-53 205.7
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.9 1.1e-49 194.1
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 63.0 3.3e-49 192.6
Cone10ag0745 . 79 206 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.9 1.5e-46 183.7
Cone1ag1761 . 6 239 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.2 4.1e-52 202.2
Cone10ag0745 . 1 174 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.0 2.6e-51 199.5
Cone3ag1500 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 2.5e-49 193.0
Cone10ag1432 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.8 2.5e-49 193.0
Cone3ag0756 . 1 166 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 2.7e-48 189.5
Cone13ag0228 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone19ag0213 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone1ag1761 . 6 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.2 5.0e-60 228.4
Cone3ag0756 . 70 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 6.3e-55 211.5
Cone10ag0745 . 1 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.8 1.8e-54 209.9
Cone10ag1432 . 22 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 4.1e-54 208.8
Cone3ag1500 . 22 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 9.1e-54 207.6
Cone13ag0228 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone19ag0213 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone13ag0228 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.4 6.5e-80 294.7
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.9 1.1e-79 293.9
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.4 9.8e-52 201.1
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.9 2.4e-50 196.4
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 1.1e-47 187.6
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.5 3.3e-47 186.0
Cone10ag0745 . 79 180 CCAAT-HAP5 Transcription Factor Family AT5G63470 84.3 6.8e-45 178.3
Cone10ag1432 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 6.8e-64 241.1
Cone3ag1500 . 47 201 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.9 4.4e-63 238.4
Cone10ag0745 . 50 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.0 5.1e-51 198.4
Cone3ag0756 . 71 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.6 4.3e-50 195.3
Cone13ag0228 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone19ag0213 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone1ag1761 . 62 178 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.3 1.2e-49 193.7
Cone1ag0827 . 1 299 CCAAT-HAP5 Transcription Factor Family AT3G12480 52.3 7.2e-62 235.0
Cone5ag0992 . 1 297 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.6 6.1e-61 231.9
Cone12ag0815 . 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.8 1.9e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45878 PF02362 B3 6.40E-17 CL0405 Cone TF