Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1514 ATGTTCCATAATTCCTCGAAGAAACCAAGCTCCAGCACTAGTTTGAATTCACATCATGAGAGGGCGAATATGAACATGTGTGTTCAAGCCGCAGACTCTGGTCTGGTCCTTACCACAGACCCTAAGCCTCGTCTCCGTTGGACGGTGGAGCTCCATGAACGCTTTGTCGATGCTGTCACTCAGCTTGGAGGACCTGACAAGGCCACTCCAAAGACCATTATGAGGGTTATGGGGGTGAAGGGTCTTACTCTTTACCACCTCAAAAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAACCTCATAAGGAATTCAATGATCACTCCATGAAGGATGCTTCGACTTTAGAACTTCAACGAAACAACGCAGCTTCGTCTGGAATGCTAGGCCGCAGTATGAATGAGATGCAAATGGAGGTGCAAAGAAGGTTGCATGAACAATTAGAGGTACAGAGACATCTTCAGTTGAGGATAGAAGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAGGCTTGTCAAACTCTTGCCGGGGAAAGCAATAACAACATTAATTCCGGTGTAGCAGCCTTTAATATTAATTCTCATCAGGCTCTTATCAACTTGCCACCTAATTTCCAAGATATTGACATTAATTCATACGGAGGGGATCATCATCATCATCATCATCAACTAATGCTTGACCATCTCCAACAGCCTCATGGTGGTGGTGGAAAGAGCTGCAGCCCAGGCCTAGTTTGGTCTGAGCAAATGTGCGATCAGCTGGGATCCGGCCAAGATGAGACTTTCAAGACCTTGCAGCCACATGACCAGAATCATCATGAGATGGATCTGTATGAAACAAAGCTAGGACTCTCAGGAGGTCATCATCATGCAGCAGCCATGCCGGAAAAGAAGTTATTTGATGCGCCGGCGACCCTAAAGCATGAAAGATCAATGATGATCTCATCACCTAGAAGGTCACCACTTCATTCAGCTGATCATAGGATCAACTATATCACCAAAGGCAACAGTAATAATAATAATAATGGTGCTATACAGCAGTACTAG 1047 45.08 MFHNSSKKPSSSTSLNSHHERANMNMCVQAADSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSMKDASTLELQRNNAASSGMLGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGESNNNINSGVAAFNINSHQALINLPPNFQDIDINSYGGDHHHHHHQLMLDHLQQPHGGGGKSCSPGLVWSEQMCDQLGSGQDETFKTLQPHDQNHHEMDLYETKLGLSGGHHHAAAMPEKKLFDAPATLKHERSMMISSPRRSPLHSADHRINYITKGNSNNNNNGAIQQY 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33669386 33671583 + Conep03aG0203200.1 Cone3ag1514 434973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1514 348 FunFam Myb family transcription factor 41 99 - -
Cone3ag1514 348 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Cone3ag1514 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 19 243 IPR046955 GO:0003700(InterPro)
Cone3ag1514 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cone3ag1514 348 Gene3D - 41 99 - -
Cone3ag1514 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Cone3ag1514 348 Pfam MYB-CC type transfactor, LHEQLE motif 135 174 IPR025756 -
Cone3ag1514 348 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1514 Cone-Chr3:33669386 Cone4ag0401 Cone-Chr4:1822889 7.99E-48 dispersed
Cone10ag1448 Cone-Chr10:11222271 Cone3ag1514 Cone-Chr3:33669386 1.22E-202 wgd
Cone3ag1514 Cone-Chr3:33669386 Cone8ag1607 Cone-Chr8:11908305 1.52E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45879 PF02496 ABA_WDS 9.10E-34 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1514 - - - 0.0