Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0048 ATGAAGAAGGGAGGCTTAAACCCTGGCTTGAAGCTCAGTCTTCCTCCTTCCGATGAAGTTTCCTTCGCCAAGTTTCTAACTCAGAGCGGAACGTTTATGGATGGCGATCTGCTTGTTGGAAGGAACGGAGTCCGAATCGTCTCTCAGACCGAAGTTGAAGCTCCACCTCCACCAATTAATCCTTCGGACAACCAGCTGAGCTTAGCAGATTTAGATGCAATCAAAGTTATCGGAAAAGGAAATGGTGGAATCGTACAGTTGGTGCAACACAAGTGGACTGGCCAATTTTTTGCATTAAAGGTAATTCAAATGAACGTTGAGGAGTCTTATCGCAAGCAGCTTGCACAAGAACTGAAAATTAATCAATCATCACAGTGCCCATATGTTGTAGTCTGTTATCAGTCTTTCTATGATAACGGTGCGATTTCCATCATCTTAGAGTACATGGATGGGGGATCTCTAGCAGATTTTCTGAAAAAAGTGAAGAAAGTACCAGAGCAATATCTCGCTGGTATTTGTAAACAGGTGCTACATGGGTTAGTGTATCTTCATCATGAAAAGCATATCATTCACAGAGACCTAAAGCCTTCTAATCTGCTAATAAATCATAGAGGAGAAGTCAAGATTACCGACTTTGGTGTCAGTGCCATAATGGCAAGTACCTCTGGACAGGCAAATACTTTTGTTGGCACATACAACTATATGTCTCCAGAGAGAATTATTGGAAACAAATATGACAACAAAAGTGATATATGGAGCTTGGGATTGGTATTGCTCGAGTGTGCAACAGGTCAATTCCCTTACCTTCCCCCTGAGCAAGATGAAGGATGGGTTAACTTTTATGAGCTTATGGAAGCTATTGTTGAACAACCACCACCAATGCCTCCTTCTAACCAGTTTTCTCAAGAATTCTGCTCATTTATCACTGCATGCGTACAGAAGAACCCAAGTGATAGACTCTCAGCACGTGAGCTATTGGCACATCCATTCATCAATAACTTTAAAGAAGAGTCAAATGATCTAGCTTCTTACTTTACAAATGCAGGATCTCCATTAGCAACGTTCTAA 1068 41.48 MKKGGLNPGLKLSLPPSDEVSFAKFLTQSGTFMDGDLLVGRNGVRIVSQTEVEAPPPPINPSDNQLSLADLDAIKVIGKGNGGIVQLVQHKWTGQFFALKVIQMNVEESYRKQLAQELKINQSSQCPYVVVCYQSFYDNGAISIILEYMDGGSLADFLKKVKKVPEQYLAGICKQVLHGLVYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGQANTFVGTYNYMSPERIIGNKYDNKSDIWSLGLVLLECATGQFPYLPPEQDEGWVNFYELMEAIVEQPPPMPPSNQFSQEFCSFITACVQKNPSDRLSARELLAHPFINNFKEESNDLASYFTNAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 242138 245695 + Conep04aG0004800.1 Cone4ag0048 435026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0048 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 Pfam Protein kinase domain 74 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Cone4ag0048 355 FunFam Mitogen-activated protein kinase kinase 6 40 150 - -
Cone4ag0048 355 Gene3D Phosphorylase Kinase; domain 1 57 150 - -
Cone4ag0048 355 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 22 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone4ag0048 355 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0048 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Cone4ag0048 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cone4ag0048 355 CDD PKc_MAPKK_plant_like 69 336 - -
Cone4ag0048 355 SUPERFAMILY Protein kinase-like (PK-like) 52 336 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0048 Cone-Chr4:242138 Cone7ag1164 Cone-Chr7:8676600 1.44E-150 dispersed
Cone4ag0048 Cone-Chr4:242138 Cone7ag0046 Cone-Chr7:199505 5.07E-257 wgd
Cone4ag0048 Cone-Chr4:242138 Cone7ag0750 Cone-Chr7:4589460 1.23E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82717 PF03357 Snf7 3.10E-30 CL0235 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0048 K20603 - cit:102625262 590.112