Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0049 ATGGATGAAGTATCTTCTTCTCCAGTTGCTGTTGAGTCATATAGGCTAAGTAGTTTGGCCTGTGATGAATCAGCAGCAAGTACTATTCAGAGGGAGATTAATGGACTCAAGTTCTTTGCGAACTCAGCAAACTTGTTTACAATGAAGCCAAATAATGCTGTTCCTGGTGAATCCAATATTTCTTGTGGAAACGGATCTGATCGCATTCATTATAGTCCAAAGACTGGAAAAGGACCTGTTTTCTCAAATATTGTTTCCGGAAGAGAGTGGAGTGAGAATAGTAGGATCATACTGACTGAAACTACTAACCAGCCCTTGTCTTTAAGTGGTACTACTACTAATCACTCCCAAGGTTCTTCTTATTCTCTTGCTTCTGAAGCAAGATCAATCATCCGTGGCGAGGAATCGTCGAATCTTGGTAGATCCCAAATTATCAGGAAACCCAATTCGAGGGAGGAACCAAATCTCGAATCTGGATTGGGAAAATATGTCATAGACATAGTGGGTTTGCCAGATCATGTAGGAGAAGAAAAAGATTACAGTGGATCTTATCCGTCAAATCCAGATGCATCTACTTTAGTACTTGATCCTGATGTGCACCAAGGAAAGAAGATATGTAGAACAAGCAGAAATTGTATTGTTAAATTGGATCTTGAACCCCTTTGGGGGTTTACATCTATTTGTGGGAGGCGACCCGAAATGGAAGATGCTTGTACTAGTTTACCCCATTTTTCGCAGATTGCTACCCATATGCTTAAGGATGATAGTGGAATTAACAGCACACACCAAAATCTACGTCGTATGGATGCCCATTTCTTTGGGGTCTATGATGGGCATGGAGGCAGTCAGGTTGCTAACTATTGCCGAGAACGAATTCATTCAGCTTTGGTGGAGGAGATAGAGATTGCAAAAGGCAGCTTGAATGATGAACAATGGAAGAACATTTTCGCCAACTGCTTTCTAAAAGTTGATAATGAAATTGAAATTGGAGGTACAGTTAAAGGAAGTGATTCCGAGAAATCTGAGGCTAGTCCGGCTAAACCTATTGCACCTGAAACTGTGGGTTCAACTGCTGTGGTGGCAGTTATCGGTCCGACTCACATTATAGTTGCAAACTGTGGAGATTCTAGAGCGGTTTTATATCGTGGAAAAGTTCCACTCCCATTGTCAGTAGATCACAAAGTAAGCCCATGTGTTAGCTTTGGCATGAACATTCTCACGGTTAGTTCGTAA 1233 41.44 MDEVSSSPVAVESYRLSSLACDESAASTIQREINGLKFFANSANLFTMKPNNAVPGESNISCGNGSDRIHYSPKTGKGPVFSNIVSGREWSENSRIILTETTNQPLSLSGTTTNHSQGSSYSLASEARSIIRGEESSNLGRSQIIRKPNSREEPNLESGLGKYVIDIVGLPDHVGEEKDYSGSYPSNPDASTLVLDPDVHQGKKICRTSRNCIVKLDLEPLWGFTSICGRRPEMEDACTSLPHFSQIATHMLKDDSGINSTHQNLRRMDAHFFGVYDGHGGSQVANYCRERIHSALVEEIEIAKGSLNDEQWKNIFANCFLKVDNEIEIGGTVKGSDSEKSEASPAKPIAPETVGSTAVVAVIGPTHIIVANCGDSRAVLYRGKVPLPLSVDHKVSPCVSFGMNILTVSS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 245356 248017 - Conep04aG0004900.1 Cone4ag0049 435027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0049 410 Gene3D - 213 398 IPR036457 -
Cone4ag0049 410 ProSiteProfiles PPM-type phosphatase domain profile. 221 410 IPR001932 -
Cone4ag0049 410 ProSitePatterns PPM-type phosphatase domain signature. 272 280 IPR000222 GO:0043169(InterPro)
Cone4ag0049 410 SUPERFAMILY PP2C-like 221 396 IPR036457 -
Cone4ag0049 410 CDD PP2Cc 223 396 IPR001932 -
Cone4ag0049 410 SMART PP2C_4 211 408 IPR001932 -
Cone4ag0049 410 Pfam Protein phosphatase 2C 224 396 IPR001932 -
Cone4ag0049 410 PANTHER PROTEIN PHOSPHATASE 161 395 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0049 Cone-Chr4:245356 Cone7ag1233 Cone-Chr7:9143732 2.64E-52 dispersed
Cone4ag0049 Cone-Chr4:245356 Cone7ag0047 Cone-Chr7:202661 1.62E-34 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0049 K14497 - mdm:103400838 244.973