Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0052 ATGGGAGTCGCAGGTGGTGGAGAGGCAGCAACGGTGGAGCCGATGTCAGTAGCGGTGGCTGTTAAAGGTGTTCCAGGCGGCGGAGGTGGAAACGGAAGTCGACGCGCGGTCTGGTGGGCGGTGGAGAATCTCATGCCCAAGGCGGATCGTTTCATATTGATCCACGTGATGCCTAGAATCACTCACATCCCTACTCCATTAGGAGATCGAATTCCAGTCTCGGAGCTAGATAGAAACGTGGTATCACTTTTCGTTCATGATACAAGACAGAAATTTGAGCAAGTTTTCATCCCATTTAAGAAAATCTGCAGAAATTCAAAGGTCGAAACTTTAATTTTAGAGGATGAGAACCCAGCAGCAGCACTTCTAAGATATATATCAGAATACCGGATTAAAGTCTTAGTTTTGGGTTCTTGCTCTTCCGGTTGCATAACAAGGAAACTTAAAAGACCCAGGGTGCCCCAAATCGTCTTGAGATATGCACCAGATACTACTGATATTTACATCATACACAAGAATGAAAACAACCGAAGAAGATCAGAAAGTTCTTCGTTTACTAGTGAAAAAAACTCTAAATCCCGTGATCATGAAAAATCATCGGCGATTTCTTCTTCCTCTGTGGAATCAAAAGCTCATCATAATATCACAGCCCGTCCAGAAGTGATTCGTGATGGTCTTGATGATACTTTTGAGACTACAACTGAACAGACTGAAGTGGAATTACTGCAGTTAGAACTAGAAAACACAGTTGCAATGTATAAACGGGCTTGTGAAGAACTAGTTCATACCAAAATTAAGGTTCGTTCGATTTCTTCAGAATATCTTGAAGAGGCAAGAAGAGTGGATGCTGCTTATGAAAGAGAGGAGGCTTTAAGAAAAGTCGTTGCAGAAAATAATTTGAGGCACTTAGAAGCTTTGAAGATTCTAGACGAAGCGAAAAGCTTGTTAGCAAAAGAAGTTTATGAAAGGCAAGCGGCCGAGGTGAATGCCCTGAAAGAGTCCTTGGAGAAGCAGAAAATCATGGATGATCTTATCTTGAGTGATAAGAGATATAGAAGGTACACTAGAGAAGAAATTGAAACTGCAACTGTTTTATTTTCAAAGAGTAACGTGGTTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTTGTCTTGATCATATTCCTGTTGCCGTTAAGGTTCTCCGACATGACATATCTGACAAGAAAGATGAATTCTTGAAAGAGGTTGAAATTCTAAGTCAGATACATCATCCACATGTAGTTCTACTGCTCGGAGCATGTCCTGAAATTGGTTGCCTAGTCTACGAGTACTTGGAAAATGGAAGCTTAGATGAGTACATCTCCCAACAAAACAAAAGGCGGCTTCCTCTTCCATGGTCTGTCCGGTTCCGTATAATTTTCCAAGTAGCTTGTGGACTAGCATTCTTACACAACTCAAAACCGCAACCTATTGTTCATCGCGATCTAAAACCTGGGAATATCTTGTTAGATAGAAACTTTGTTGCCAAAATCTCAGATGTTGGGTTAGCTAAAATCATAGGAGATGTTGTTCCAGACAATATCACAGAGTACCATAACTCAATCCTAGCTGGTACACTGCATTATATGGACCCCGAGTATCAACGGACTGGAACAATCCGGCCCAAATCGGATTTATATGCATTTGGAGTCGTGACTCTTCAATTATTAACGGGCCAATATCCACATGGACTTCTATTGGCCGTTAAAAATGCATTAGCAAGTGGTTCCTTTGTTGAAATTCTTGATAAGTCGGTTCCAGATTGGCCCGTTAGAGAAACAGAAGAGTTAGCTAAAATCGCATTGAAATGCTCGAAACTCAGATGTAGAGATAGACCGGATCTTGAAACGGAAGTCTTACCGATCCTTAAAAGACTAGTTGTTGGAGATGAAATTCAAAAGGGAATATCAGATCCTACCAATCCTCCAAGCCACTACATTTGTCCAATCCTTCAGGAAATAATGGATGATCCACATATAGCAGCGGATGGATTTACATATGAGTATAGTGCTATTAAGGCTTGGCTCGAAAAACATGATGTATCACCTGTGAACAAGGTTCCGTTCGAGCATTTTACGCTAACTCCTAACCATACCTTGCATTCAGCCATTAGGGAATGGAAGTCTAAAGTGACACTTACTTCTTCTTAG 2172 41.25 MGVAGGGEAATVEPMSVAVAVKGVPGGGGGNGSRRAVWWAVENLMPKADRFILIHVMPRITHIPTPLGDRIPVSELDRNVVSLFVHDTRQKFEQVFIPFKKICRNSKVETLILEDENPAAALLRYISEYRIKVLVLGSCSSGCITRKLKRPRVPQIVLRYAPDTTDIYIIHKNENNRRRSESSSFTSEKNSKSRDHEKSSAISSSSVESKAHHNITARPEVIRDGLDDTFETTTEQTEVELLQLELENTVAMYKRACEELVHTKIKVRSISSEYLEEARRVDAAYEREEALRKVVAENNLRHLEALKILDEAKSLLAKEVYERQAAEVNALKESLEKQKIMDDLILSDKRYRRYTREEIETATVLFSKSNVVGEGGYGKVYKCCLDHIPVAVKVLRHDISDKKDEFLKEVEILSQIHHPHVVLLLGACPEIGCLVYEYLENGSLDEYISQQNKRRLPLPWSVRFRIIFQVACGLAFLHNSKPQPIVHRDLKPGNILLDRNFVAKISDVGLAKIIGDVVPDNITEYHNSILAGTLHYMDPEYQRTGTIRPKSDLYAFGVVTLQLLTGQYPHGLLLAVKNALASGSFVEILDKSVPDWPVRETEELAKIALKCSKLRCRDRPDLETEVLPILKRLVVGDEIQKGISDPTNPPSHYICPILQEIMDDPHIAADGFTYEYSAIKAWLEKHDVSPVNKVPFEHFTLTPNHTLHSAIREWKSKVTLTSS 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 270922 274791 - Conep04aG0005200.1 Cone4ag0052 435030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0052 723 ProSiteProfiles Protein kinase domain profile. 366 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0052 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 720 IPR013083 -
Cone4ag0052 723 ProSitePatterns Protein kinases ATP-binding region signature. 372 393 IPR017441 GO:0005524(InterPro)
Cone4ag0052 723 Gene3D Transferase(Phosphotransferase) domain 1 439 641 - -
Cone4ag0052 723 CDD RING-Ubox_WDSUB1-like 650 704 - -
Cone4ag0052 723 MobiDBLite consensus disorder prediction 178 201 - -
Cone4ag0052 723 CDD STK_N 16 172 - -
Cone4ag0052 723 Gene3D HUPs 17 163 IPR014729 -
Cone4ag0052 723 Pfam Protein tyrosine and serine/threonine kinase 369 623 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0052 723 Pfam U-box domain 650 716 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag0052 723 PANTHER OS02G0152300 PROTEIN 17 711 IPR051348 -
Cone4ag0052 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 148 - -
Cone4ag0052 723 SUPERFAMILY Protein kinase-like (PK-like) 349 623 IPR011009 -
Cone4ag0052 723 SMART Ubox_2 652 714 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag0052 723 FunFam Os07g0541700 protein 439 531 - -
Cone4ag0052 723 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 338 438 - -
Cone4ag0052 723 SUPERFAMILY RING/U-box 645 717 - -
Cone4ag0052 723 Coils Coil 318 341 - -
Cone4ag0052 723 Gene3D Phosphorylase Kinase; domain 1 336 438 - -
Cone4ag0052 723 ProSiteProfiles U-box domain profile. 648 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag0052 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0052 723 SMART serkin_6 366 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0052 723 MobiDBLite consensus disorder prediction 178 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0900 Cone-Chr14:7213550 Cone4ag0052 Cone-Chr4:270922 1.55E-135 dispersed
Cone4ag0052 Cone-Chr4:270922 Cone4ag1867 Cone-Chr4:13376518 1.55E-117 dispersed
Cone17ag0083 Cone-Chr17:463705 Cone4ag0052 Cone-Chr4:270922 2.29E-99 wgd
Cone20ag1321 Cone-Chr20:8556448 Cone4ag0052 Cone-Chr4:270922 2.66E-97 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0052 . 16 723 Plant U-box Gene Family AT5G57035 53.7 1.7e-219 760.0
Cone4ag1867 . 97 502 Plant U-box Gene Family AT5G57035 51.0 8.0e-108 389.0
Cone17ag0006 . 1 219 Plant U-box Gene Family AT5G57035 56.8 3.7e-65 247.3
Cone5ag0138 . 239 472 Plant U-box Gene Family AT5G05230 59.4 6.8e-70 261.9
Cone1ag1616 . 220 453 Plant U-box Gene Family AT5G05230 59.4 8.3e-68 255.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82718 PF08381 BRX 1.20E-27 No_clan Cone PK