Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0057 ATGACTTGCTACGTCGCTGTTTCGAGCTCTCCAAGCTTTTCTCCATCATCGTCTCTTTTCTGCAGCAAATCCATAATCTCGCCTTCCCACGAGGCGGTAACCCTAACCTTAAGCCACTTAAAGTCCTCGCAATCTTCGTCTTCGTCCTACTCTTCAGCTCCATCTTCGCCTTCTTCGCCTTTTCGGCCCCGCCTTCCGAAACCACCACATGTAAGTTCTCCTTTTGTTTCGGCAGCTTCCAATTCGACTCTGGCTCCATCTCCGGTCCCGTTGTCTTCCTCAGCTCATACGGAGCTAAAGAGGAAGAGGCCGGCGAGGTTAGACATTCCTGTGGCATCGTTGAGTTTGGGGAATTTGTCGATTCCCTCACCGGCGTCGATGAGGGAGATCGTAGAGGTTGACAGAGAGGGCCATTCTATTTACTGCAAAAGAGGCAGGAGAGAGTCTATGGAGGATCGCTACTCCGCCGCCGTTGATCTTCAAGGAGATCCCAAACAGGCTTTCTTCGGCGTCTTTGACGGGCATGGAGGTGCAAAAGCTGCTCAATTTGCAGCTGAAAACTTGGAAAAGAACATTTTTGACGAAATAGAAAGGAGGGACGAGGCTGAAATCGAGCAGGCTGTTAAGACTGGTTACCTCAACACTGATTCCGATTTCTTAAAAGAGGATATGCGTGGTGGGTCCTGTTGTGTAACTGCTTTGATCAGAAAAGGCAACCTTGTTGTATCCAATGCCGGTGATTGCCGTGCCGTTATAAGCAAAGGGGGAGTCGCAGAGGCTCTCACATCAGATCACTGTCCTTCCAGACAAGATGAAAGGGATAGAATTGAGACCTCGGGTGGATATGTTGATTTCTGCCATGGAGTACTGAGAATTCAAGGATCTTTGGCAGTCTCTAGAGGTATCGGAGACAGGCACCTTAAAAAGTGGGTAATTGCAGAACCAGAGACGAAAATCTTTTCAATAGAATCTCAACATGAGTTCTTACTCTTAGCTTCAGACGGCTTATGGGATACGGTGACCAATCAAGAAGCTGTAGACATTGTCAGACCGTTATGTATCAAAAGTGACAAACCGGAACCATTGTTTGCATGTAAAAAGCTTGTGGAGCTTTCTACTTCAAGAGGGTCTGCAGATGATATCAGTGTCATACTAATCCAGTTGGGAAACTATATCAGTTGA 1182 47.29 MTCYVAVSSSPSFSPSSSLFCSKSIISPSHEAVTLTLSHLKSSQSSSSSYSSAPSSPSSPFRPRLPKPPHVSSPFVSAASNSTLAPSPVPLSSSAHTELKRKRPARLDIPVASLSLGNLSIPSPASMREIVEVDREGHSIYCKRGRRESMEDRYSAAVDLQGDPKQAFFGVFDGHGGAKAAQFAAENLEKNIFDEIERRDEAEIEQAVKTGYLNTDSDFLKEDMRGGSCCVTALIRKGNLVVSNAGDCRAVISKGGVAEALTSDHCPSRQDERDRIETSGGYVDFCHGVLRIQGSLAVSRGIGDRHLKKWVIAEPETKIFSIESQHEFLLLASDGLWDTVTNQEAVDIVRPLCIKSDKPEPLFACKKLVELSTSRGSADDISVILIQLGNYIS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 293560 295589 + Conep04aG0005700.1 Cone4ag0057 435035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0057 393 SUPERFAMILY PP2C-like 135 390 IPR036457 -
Cone4ag0057 393 Gene3D - 138 392 IPR036457 -
Cone4ag0057 393 CDD PP2Cc 137 388 IPR001932 -
Cone4ag0057 393 ProSiteProfiles PPM-type phosphatase domain profile. 137 388 IPR001932 -
Cone4ag0057 393 Coils Coil 185 205 - -
Cone4ag0057 393 PANTHER PROTEIN PHOSPHATASE 124 386 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone4ag0057 393 ProSitePatterns PPM-type phosphatase domain signature. 168 176 IPR000222 GO:0043169(InterPro)
Cone4ag0057 393 Pfam Protein phosphatase 2C 140 381 IPR001932 -
Cone4ag0057 393 FunFam probable protein phosphatase 2C 25 130 391 - -
Cone4ag0057 393 SMART PP2C_4 124 386 IPR001932 -
Cone4ag0057 393 MobiDBLite consensus disorder prediction 44 58 - -
Cone4ag0057 393 MobiDBLite consensus disorder prediction 44 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0057 Cone-Chr4:293560 Cone7ag1645 Cone-Chr7:11098796 2.05E-57 dispersed
Cone12ag0679 Cone-Chr12:6226908 Cone4ag0057 Cone-Chr4:293560 1.93E-75 transposed
Cone14ag0667 Cone-Chr14:3439058 Cone4ag0057 Cone-Chr4:293560 8.51E-13 wgd
Cone4ag0057 Cone-Chr4:293560 Cone5ag0192 Cone-Chr5:795244 6.00E-123 wgd
Cone4ag0057 Cone-Chr4:293560 Cone7ag0053 Cone-Chr7:230820 1.88E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0057 K17506 - csv:101207841 481.485