Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0058 ATGGCAAAACTCAACCTTCCTTCTAATTCAGACAAGCTTTCTTGGGTGAGAGGTAAGTGTATCGGCATGGGGTCTTTCGGTACTGTTAGTCTCGGAGTCTACAAATCTGACGGTCGGGTTTTCGCCGTCAAGTCCGTGAATCGCAACACGTGTCTGTCCAACCAGATTGAATCCTTAGAGAACGAGATTAGGATTCTCCGATCACTATCCTCACCGTACGTTGTCGGTTTCCTCCGTGATGACGTTACATACGAATCCCTGCCTACCGCCACCGCATCGTCGTACCGGAACTTGCACATGGAGTACTTGCCAGGTGGTACCGCTGCTGACGTGCCTCTTCGTGCTCATGACGTGGATGAGATGGCACTAAGGTCCCGCCTCTGGTGTATAGTCTCGGCGTTGAGGTACGTACACTCGAAGGGCATAGTTCACTGCGACGTGAAGGGGAGGAATATTCTGTTAGATTCCGACAACCCGAATATCGCTAAGCTCGCGGATTTCGGGTCAGCTATAGACATCTCCGCCTATATGGAGAGTAAGTTAATCCCTATTGTGCCACGTGGAAGTCCTCTGTGGATGGCTCCTGAGGTAATCCGTCGAGAATCACAAGGCCCTGAATCCGATATTTGGTCTCTGGGCTGCACGATTATCGAGATGGTGACCGGAAAACCGTCGTGGGAGGATTGCGGCGTTGATACGCTGAGTCGAATCGGTTACTCCGCCACCGAGTTGCCAGAATTCCCGAATCACTTATCAGTAACGGGTCGTGATTTCCTCGAAAAGTGTCTTAGAAGGGATCCGAGTCGGCGATGGAGCTGTGATCAGCTGCTGCAGCATCCATTTCTGGAGTTGGAATCACAACGTGCCTCGACGGAGTTCTTGTACTCATCGCCTCGCTGCGTGCTCGACTGGATTAACTCGGAGTTTGAAGACGGAGAAGACGATGAGGAAATTGACGATCATCAATCCTCTGTTTGTGAGAAACACGCGGGTTCTGCGAAGGAGAGGATTGGTAAATTGTCTACAATTTCAGGGGCAAAATGGGAATCTGATGATTGGGCGACGGTGAGGTTTCTAGCCAATCAAGAAGATTCGGGAGTGGATGAACTGGCGGGTGGTAACTGTAGCAGTTGTGAGGAAGACGGTGAAGGGACAACTCTCGGCGTGGATTACCCACCCAACCACCGCTAA 1191 51.22 MAKLNLPSNSDKLSWVRGKCIGMGSFGTVSLGVYKSDGRVFAVKSVNRNTCLSNQIESLENEIRILRSLSSPYVVGFLRDDVTYESLPTATASSYRNLHMEYLPGGTAADVPLRAHDVDEMALRSRLWCIVSALRYVHSKGIVHCDVKGRNILLDSDNPNIAKLADFGSAIDISAYMESKLIPIVPRGSPLWMAPEVIRRESQGPESDIWSLGCTIIEMVTGKPSWEDCGVDTLSRIGYSATELPEFPNHLSVTGRDFLEKCLRRDPSRRWSCDQLLQHPFLELESQRASTEFLYSSPRCVLDWINSEFEDGEDDEEIDDHQSSVCEKHAGSAKERIGKLSTISGAKWESDDWATVRFLANQEDSGVDELAGGNCSSCEEDGEGTTLGVDYPPNHR 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 298908 300192 + Conep04aG0005800.1 Cone4ag0058 435036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0058 396 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cone4ag0058 396 FunFam Serine threonine protein kinase putative 13 341 - -
Cone4ag0058 396 CDD STKc_MAPKKK 14 282 - -
Cone4ag0058 396 MobiDBLite consensus disorder prediction 371 396 - -
Cone4ag0058 396 SUPERFAMILY Protein kinase-like (PK-like) 15 283 IPR011009 -
Cone4ag0058 396 Coils Coil 42 69 - -
Cone4ag0058 396 Gene3D Transferase(Phosphotransferase) domain 1 13 341 - -
Cone4ag0058 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0058 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 9 283 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone4ag0058 396 ProSiteProfiles Protein kinase domain profile. 15 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0058 396 Pfam Protein kinase domain 17 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0058 396 SMART serkin_6 15 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0058 Cone-Chr4:298908 Cone8ag1426 Cone-Chr8:11113054 6.15E-63 dispersed
Cone4ag0058 Cone-Chr4:298908 Cone7ag0054 Cone-Chr7:238135 9.73E-243 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82719 PF00291 PALP 5.20E-48 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0058 - - - 0.0