Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0067 | ATGTCGAAGAACGGGGAAGGTGAGGTAGTTTGTGTTACCGGTGCAAGCGGCTGTATCGGATCTTACCTCGTCCACCTCCTCCTCCTCCGCGGATATTCCGTTCACGCCACCGTTCAAAATCTCAAGGATAAAACCGAGACCAAGCATCTGGAAGCTCTAGAAGGGGCAGATACGCGTCTTCGTCTCTTCCAGATTGATCTCCTTGACTACAACTCCATCGTCGCCGCCGTTGGACCCAGCTATCAAAGGAACCGTGGGGCCCGGCGTGTGGTGGTGACGTCATCTACCTCCGCCATCACTCCTAGCCCTCACTGGCCGTCCGATGTTATCAAGCGAGAAGATTGCTGGACCGACGTTGATTACTGCAAGCAAAATGAATTATGGTATCCGCTTTCAAAAACCGAAGCCGAAAAAGCTGCTTGGGAGTTTGCCAGGGACAAGGGTTTGGATGTGGTCATGGGGTGCACTGAAACATACGAAAACTTTTATATGGGACCCGTACATTTCAAAGATGTAGCCCTTGCACATATTTTGGTGTATGAGAACAAATCTGCAAGTGGAAGGCACATGTGTGTTGAAGCTATATCTCATTTTGGTGACTTGGCGGCAAAGGTTGCTGAACTTTATCCAGAGTTCGAGGTAGCCAGTTTGCCCAAAGATACGCAACCGGGATCGCTGAGGTCGAAAGATGGAGCTAAGAAACTGATGGACCTGGGTTTACATTTTATTCCAGTGGAGCAAATCATTAAGGATGCTGTTGAGAGCTTAAGAAGCAAGGGATTCATTTCTTGA | 792 | 48.86 | MSKNGEGEVVCVTGASGCIGSYLVHLLLLRGYSVHATVQNLKDKTETKHLEALEGADTRLRLFQIDLLDYNSIVAAVGPSYQRNRGARRVVVTSSTSAITPSPHWPSDVIKREDCWTDVDYCKQNELWYPLSKTEAEKAAWEFARDKGLDVVMGCTETYENFYMGPVHFKDVALAHILVYENKSASGRHMCVEAISHFGDLAAKVAELYPEFEVASLPKDTQPGSLRSKDGAKKLMDLGLHFIPVEQIIKDAVESLRSKGFIS | 263 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 346442 | 347981 | - | Conep04aG0006800.1 | Cone4ag0067 | 435045 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0067 | 263 | Gene3D | - | 1 | 79 | - | - | |
| Cone4ag0067 | 263 | Gene3D | - | 80 | 263 | - | - | |
| Cone4ag0067 | 263 | Pfam | GDP-mannose 4,6 dehydratase | 12 | 77 | IPR016040 | - | |
| Cone4ag0067 | 263 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 5 | 257 | IPR036291 | - | |
| Cone4ag0067 | 263 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 9 | 77 | IPR050425 | GO:0016616(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag1055 | Cone-Chr20:7376479 | Cone4ag0067 | Cone-Chr4:346442 | 1.99E-07 | dispersed | |
| Cone4ag0067 | Cone-Chr4:346442 | Cone5ag1760 | Cone-Chr5:12536825 | 2.50E-22 | dispersed | |
| Cone4ag0067 | Cone-Chr4:346442 | Cone7ag0061 | Cone-Chr7:266764 | 8.98E-160 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0067 | - | - | - | 0.0 |