Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0070 ATGAGCGGCTCCTCACCATGTGCTTCCTGCAAGCTGTTAAGGCGTCGATGTGCAAAGGACTGCATCTTTGCCCCTTACTTCCCTTCCGATCAGCCCCACAATTTTGCCACTGTTCATAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGGTCCCACTGAATCAAAGAGCGGATGCAGTGAGCAGTTTGGTGTACGAAGCGAACGCGAGAATCCGGGACCCGGTTTACGGATGTGTCGGGGTGATATTGTTGCTAGAGAGTCAAGTGTCGCAGCTCCAAAATCAGTTGGCTATAGCTCAAGCTGAGATACTCTGCATCCAAACGCAACAAGAGATCAACAACCCTAATAAGTATAGTTCCAGCTTACCATTGTTCCAGTTAGACCAAGGCGACATGTCGCTCCTTCTATCGAGTAATTCTCATAGCAACTTGAATCATATTTCCCAGTCCGTTGGATTATTTTCTAATTCCTCCGGCAACAATATAATCCAAGATCCTTTCAAGAAAGAATCCTTCTGGGCTTAA 534 46.25 MSGSSPCASCKLLRRRCAKDCIFAPYFPSDQPHNFATVHKVFGASNVSKMLQEVPLNQRADAVSSLVYEANARIRDPVYGCVGVILLLESQVSQLQNQLAIAQAEILCIQTQQEINNPNKYSSSLPLFQLDQGDMSLLLSSNSHSNLNHISQSVGLFSNSSGNNIIQDPFKKESFWA 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 352109 352715 - Conep04aG0007100.1 Cone4ag0070 435048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0070 177 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cone4ag0070 177 Coils Coil 85 112 - -
Cone4ag0070 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 134 - -
Cone4ag0070 177 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0070 Cone-Chr4:352109 Cone8ag1587 Cone-Chr8:11808670 2.94E-55 dispersed
Cone17ag0097 Cone-Chr17:522859 Cone4ag0070 Cone-Chr4:352109 5.31E-22 wgd
Cone18ag0786 Cone-Chr18:4481951 Cone4ag0070 Cone-Chr4:352109 3.49E-65 wgd
Cone20ag1310 Cone-Chr20:8508985 Cone4ag0070 Cone-Chr4:352109 9.86E-22 wgd
Cone4ag0070 Cone-Chr4:352109 Cone5ag0176 Cone-Chr5:730885 6.14E-51 wgd
Cone4ag0070 Cone-Chr4:352109 Cone7ag0064 Cone-Chr7:276888 6.90E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45887 PF05686 Glyco_transf_90 2.50E-147 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0070 - - - 0.0