Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0075 ATGGCTTCCTCTTCTGGGAGCTTAGACGCCTCTGCAAATTCACGTCAAAACCTCACCTTCTCCACACACCCTTTCATGAATACATCATACTCCGAACTCTTAGCCTCCGGCAGCGGCGGAGACGACTTCACCCGACGCCGTGGTCTGTCAGAACGAATAGCAGAACGAACAGGCTCAGGTGTACCGAAATTCAAATCGATCCCACCTCCTTCCCTGCCGCTATCTCCATCACCTGTCTCTCCTTCCTCATACTTTGCTATTCCGGCTGGGCTCAGCCCAGCCGAGCTCCTCGACTCCCCTGTTCTTCTCAGCTCCTCTTACATTCTTCCATCTCCAACTACTGGATCGTTTCCAGCTCAAGCTTTCAATTGGAAAAGCGATTCTACATATAATTACAATAACAACAACCAGCAGCAGAATATTGTCAAACTGAAAGAAGCTGATCCTAGGACCTTCTTCGATTTCTCCTTCCAAAACCAGCAAAAGGCTTCTTCTGCCTCTTTAACTGGGTGGAGTTTTCAAGAGCCAATAAGCAAGCAAGAAACCAAGGGAAAGCCGGAATTCGCGCTGGCTCAGACCCAGAGCTTCTCTCCTGAGATTTCCACCTTACAGACTCAGAGCCAGAGCAACAACGATGGCGCTACTGCTGCTACTCATGACTACACCAATCACCATAACAACCAGAATCATTCAGTATACAATAAAAGGTCGGATGATGGGTATAACTGGAGAAAATACGGACAAAAGCAAGTGAAAGGGAGTGAAAATCCAAGGAGTTATTACAAGTGCACTTTCCCGAATTGTCCGACTAAGAAGAAAGTGGAAAGGTCATTAGATGGTCAGATCACTGAAATCGTTTACAAGGGCAGCCATAACCATCCTAAGCCGCAGAACACGAGGCCATCCTCGTCGTCTGCTTCTGCTGCTTCTTCTTCTCTTGCATTGATCCAACAGGCTTCTAATCATTCCATCAGTGAATTTCCCGATCACTCATTTAGTACCATTACGAACGGGCAGATGGATTCCGCCGCTGCTACGCCTGAAAATTCTTCTATCTCGATCGGAGACGATGATTTCGACCGGAATTCTCAGAGAAGCAAATCAGCAGGAGGTGATGACTTTGATGAGGATGAAGAACCCGTCGCGAAAAGATGGAAAATGGAGGGGGATGTTAGTAACAGCAATGAAGGCATGTCAGCAGCAGGAAGCAGAACAGTAAGAGAGCCGAGAGTTGTTGTTCAAACAACTAGTGATATTGATATTCTTGATGATGGATATAGGTGGAGAAAATATGGGCAGAAAGTTGTCAAGGGAAATCCAAATCCAAGGAGCTACTATAAGTGTACAAGTCCAGGATGTCCAGTGAGAAAGCATGTGGAGAGAGCATCTCATGATCTAAGGGCAGTTATTACAACCTACGAGGGAAAGCACAACCATGATGTTCCCGCCGCCCGCGGGAGTGGAAGCCATTCTCTTAACCGCCCTTTACCCACCGCCAATACCAATCCCGGCCCACCGGCGATTTGCCCCATGGCCCATCACCAGATGACGAACAAGACCAATCTTCTTCATCCATCCTATACTATGGAAATGTTACAGGGTCCTAGTGGAGGTAGTTTTGGATTCTCGACTGAATATGGAAACTCTGTTAACGGCTCTACTTCTTACATGAACCAAGCACAACAACAACTCACGGATAATACTAATAACAATAATAATGTCTTCTCCTCAAGAGCTAAGGAAGAACCAAGAGATGACTTGTTCTTGGAATCTTTGCTTTGCTAA 1785 46.44 MASSSGSLDASANSRQNLTFSTHPFMNTSYSELLASGSGGDDFTRRRGLSERIAERTGSGVPKFKSIPPPSLPLSPSPVSPSSYFAIPAGLSPAELLDSPVLLSSSYILPSPTTGSFPAQAFNWKSDSTYNYNNNNQQQNIVKLKEADPRTFFDFSFQNQQKASSASLTGWSFQEPISKQETKGKPEFALAQTQSFSPEISTLQTQSQSNNDGATAATHDYTNHHNNQNHSVYNKRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQNTRPSSSSASAASSSLALIQQASNHSISEFPDHSFSTITNGQMDSAAATPENSSISIGDDDFDRNSQRSKSAGGDDFDEDEEPVAKRWKMEGDVSNSNEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSLNRPLPTANTNPGPPAICPMAHHQMTNKTNLLHPSYTMEMLQGPSGGSFGFSTEYGNSVNGSTSYMNQAQQQLTDNTNNNNNVFSSRAKEEPRDDLFLESLLC 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 366501 368908 - Conep04aG0007700.1 Cone4ag0075 435053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0075 594 Gene3D WRKY domain 409 475 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 ProSiteProfiles WRKY domain profile. 417 482 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 MobiDBLite consensus disorder prediction 199 241 - -
Cone4ag0075 594 MobiDBLite consensus disorder prediction 199 236 - -
Cone4ag0075 594 MobiDBLite consensus disorder prediction 478 506 - -
Cone4ag0075 594 SUPERFAMILY WRKY DNA-binding domain 414 482 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 MobiDBLite consensus disorder prediction 287 406 - -
Cone4ag0075 594 Gene3D WRKY domain 221 297 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 158 514 IPR044810 GO:0003700(InterPro)
Cone4ag0075 594 FunFam WRKY transcription factor 226 297 - -
Cone4ag0075 594 SMART WRKY_cls 422 481 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 SMART WRKY_cls 237 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 FunFam WRKY transcription factor 33 409 475 - -
Cone4ag0075 594 ProSiteProfiles WRKY domain profile. 238 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 MobiDBLite consensus disorder prediction 292 353 - -
Cone4ag0075 594 MobiDBLite consensus disorder prediction 354 390 - -
Cone4ag0075 594 MobiDBLite consensus disorder prediction 35 73 - -
Cone4ag0075 594 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 Pfam WRKY DNA -binding domain 423 480 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0075 594 SUPERFAMILY WRKY DNA-binding domain 235 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0424 Cone-Chr10:1965020 Cone4ag0075 Cone-Chr4:366501 1.76E-129 dispersed
Cone3ag0455 Cone-Chr3:2192890 Cone4ag0075 Cone-Chr4:366501 4.61E-135 dispersed
Cone4ag0075 Cone-Chr4:366501 Cone9ag0026 Cone-Chr9:128238 4.38E-80 dispersed
Cone4ag0075 Cone-Chr4:366501 Cone7ag0070 Cone-Chr7:297307 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45888 PF00481 PP2C 7.50E-60 CL0238 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0075 K13424 - vvi:100243352 658.292