Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0084 ATGGAGCATAGTTCAAACCATGTATTGATGAAAAGCTATGAACTGGGTAGATTACTAGGCCAGGGAACTTTCGGAAAGGTTTACTATGCAAGAAGTATTAGAACTAATCGAGGTGTAGCCATCAAGGAAATAAACAAAGACAAGATTTTGAAAGCCGGCCTTTTCGATCAGATCAAGCGAGAAATATCGATCATGAGACTAATCCGACACCCTAATGTCTTACAACTTTACGAGGTCATGGCCACGAAAACCAAGATTTACTTTGTCATTGAATATGCAAAAGGCGGCGAGCTTTTCGATCGAGTTTCTAAAGGCAGGCTCAAAGAGGATGTTGCGCGCAAATATTTTATACAGTTGATCAATGCAGTTGATTTCTGTCACAGTAGAGGTGTATATCATCGGGATATAAAACCCGAGAACTTACTGCTAGATGAGAATGAGAATCTTAAGGTGTCTGATTTCGGGTTAAGCACGCTAGCTGAGTCCAAGCACGAAGACGGGCCGTTTCATAGCACATGTGGCACTCTGGCCTATGTCGCACCTGAGGTCATCAACCAGAAGGGCTATGATGGGGCGAAAGCTGATATTTGGTCATGTGGTGTGGTTCTGTTTGTGCTTTTGGCGGGTTATCTTCCCTTTCATGATTCGAATCTCATGGAGATGTATAGGAAGATTGGTAGAGCAGAGTATAGATGTCCTAGCTGGTTTCCGACTGAAGCACACAGGTTGTTGAGCAAGATGTTGGATCCAAACCCGAATACTAGGATTTGTTTGGAGAGGATTAAGGAAAGTCGTTGGTTTCGAAAAGGGTTGACCTCTAAACATGTTGAAGTTGAAACGAGAGTAGATACAAACATGGCTGTTGAGGAAAAACCAGAAGAGATAGGGAGGCCTCCAAATTTGAATGCTTTTGACATTATCTCACTTTCTGCTGGATTTGATCTGTCTAACTTGTTTGAAGACAATTCTCGGAAGAGAGAAGCGAGATTCACAAGTCTGAAACCTGCCTCTGTTATTATCTATAAGATCGAAGAAATTGGTAGGCAGTTGAGAATGAGAGTACGGAAGAAGGAGGCCAGTTTGCTGAGATTGGAAGGACAAAAGGAAGGTCGGAAAGGAGTGATTTCCATCGAAGCAGAGATCTTTGAGGTTACTCCGAATTTGCATTTGGTGGAGGTGAAAAAATCGAGCGGAGATACATTAGAATATGAGAGAGTACTGAAAGACGATATTCGTCCGGGTCTTCAAGATATTGTTTGGGTTTGGCAAGGAGAGAGCTGTAAACTTCATTGTATATATGCTGATCAAATTTTACTTGTAATGTAA 1326 41.93 MEHSSNHVLMKSYELGRLLGQGTFGKVYYARSIRTNRGVAIKEINKDKILKAGLFDQIKREISIMRLIRHPNVLQLYEVMATKTKIYFVIEYAKGGELFDRVSKGRLKEDVARKYFIQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSTLAESKHEDGPFHSTCGTLAYVAPEVINQKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRAEYRCPSWFPTEAHRLLSKMLDPNPNTRICLERIKESRWFRKGLTSKHVEVETRVDTNMAVEEKPEEIGRPPNLNAFDIISLSAGFDLSNLFEDNSRKREARFTSLKPASVIIYKIEEIGRQLRMRVRKKEASLLRLEGQKEGRKGVISIEAEIFEVTPNLHLVEVKKSSGDTLEYERVLKDDIRPGLQDIVWVWQGESCKLHCIYADQILLVM 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 406201 407526 + Conep04aG0008600.1 Cone4ag0084 435062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0084 441 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Cone4ag0084 441 CDD CIPK_C 302 416 - -
Cone4ag0084 441 Pfam NAF domain 298 356 IPR004041 GO:0007165(InterPro)
Cone4ag0084 441 FunFam Non-specific serine/threonine protein kinase 6 299 - -
Cone4ag0084 441 SMART serkin_6 13 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0084 441 FunFam Non-specific serine/threonine protein kinase 297 420 - -
Cone4ag0084 441 SUPERFAMILY KA1-like 329 408 IPR028375 -
Cone4ag0084 441 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Cone4ag0084 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0084 441 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0084 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 409 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone4ag0084 441 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone4ag0084 441 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0084 441 SUPERFAMILY Protein kinase-like (PK-like) 9 278 IPR011009 -
Cone4ag0084 441 Gene3D Transferase(Phosphotransferase) domain 1 4 300 - -
Cone4ag0084 441 Gene3D Kinase associated domain 1, KA1 301 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0084 Cone-Chr4:406201 Cone5ag1047 Cone-Chr5:4584453 3.56E-217 dispersed
Cone14ag0676 Cone-Chr14:3489720 Cone4ag0084 Cone-Chr4:406201 9.15E-114 wgd
Cone15ag0687 Cone-Chr15:3700415 Cone4ag0084 Cone-Chr4:406201 7.66E-112 wgd
Cone4ag0084 Cone-Chr4:406201 Cone7ag0077 Cone-Chr7:332438 5.90E-280 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82720 PF08209 Sgf11 1.50E-10 CL0361 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0084 - - - 0.0