Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0090 ATGGCGTCCTTGGCAGCATCAACAGCCGCTGCCTCCCTTGGCGTGTCGGAAATGCTCGGAAATCCCCTCAAATTTAGCGGGGCTGCCGCAGCTCCAGGCGCTTCCAGTCCGGCCACCTTCAAGACCGTTGCCCTCTTCTCCAAGAAGAAGGCAGCCCCACCTAAGTCAAAGCCTGCACCTGCAACTCCGGCAAGTGATGAGCTTGCCAAGTGGTATGGTCCAGATAGGAGGATTTACTTGCCCTCAGGCCTCTTGGACCGGTCCGAGATCCCCGAGTACTTGACCGGAGAGGTTCCAGGAGATTATGGTTATGATCCTTTTGGTCTGAGCAAGAAGCCAGAAAACTTCAGCAAATACCAAGCATATGAGCTGATCCACGCACGGTGGGCAATGCTCGGTGCTGCTGGCTTTATCATTCCTGAGGCATTCAACAAATTCGGTGCCAACTGTGGTCCTGAAGCTGTTTGGTTCAAGACAGGAGCTCTCCTTTTGGATGGGAACACATTGAACTACTTCGGCAAGAACATTCCCATCAATCTTGTCCTTGCTGTAGTTGCCGAGGTTGTTCTTCTTGGCGGTGCCGAATATTACAGAATTACTAACGGATTGGACTTCGAAGATAAGCTCCACCCAGGCGGTCCTTTCGATCCGTTGGGTCTAGCAAATGATCCCGACCAGGCTGCAATTTTGAAGGTGAAGGAGATAAAGAATGGTAGACTAGCCATGTTTTCAATGCTTGGTTTCTTCATTCAAGCTTACGTCACAGGAGAAGGTCCGGTCGAAAACCTTGCAAAGCATCTTAGTGACCCTTTCGGAAACAACTTGCTCACGGTCATTTCAGGAAATGCTGAAAGAGCTCCTACTCTGTGA 870 50.69 MASLAASTAAASLGVSEMLGNPLKFSGAAAAPGASSPATFKTVALFSKKKAAPPKSKPAPATPASDELAKWYGPDRRIYLPSGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERAPTL 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 436412 438555 - Conep04aG0009200.1 Cone4ag0090 435068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0090 289 FunFam Chlorophyll a-b binding protein, chloroplastic 78 289 - -
Cone4ag0090 289 Gene3D Chlorophyll a/b binding protein domain 78 289 - -
Cone4ag0090 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 277 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cone4ag0090 289 SUPERFAMILY Chlorophyll a-b binding protein 71 279 - -
Cone4ag0090 289 Pfam Chlorophyll A-B binding protein 91 252 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0090 Cone-Chr4:436412 Cone6ag0906 Cone-Chr6:4652083 1.35E-71 dispersed
Cone4ag0090 Cone-Chr4:436412 Cone7ag0081 Cone-Chr7:361283 1.60E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0090 K08916 - vvi:100246457 504.597