Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0108 ATGACACCTTCGGAAGGTTTTGCAAGAAATATGCCTGTAAGAAAGTTTGTTTCTTCGGGTGATGCACCTTCTATTAGTAGGAAACATATAAGTTTTCCTGTGAAGTTGTACAAGGAATCTCAACTTGTAGAACCTGAGACAAACCATACAGTGGAGCCTGATTTGGAAATTGACATTAGAGAAGTCTATTTCCTTATCATGCATTTTCTTGCTTCTGGGCCATGCCGTAGGACTTCTGAACAATTATGTAATGAACTTCTTGAACATCAACTTTTACCCAAAAGATATCATGCTTGGTACTCGAGGAATGGGCGATGCAGTGGGGATGAACATGATGATGGCATGTCATTCCCACTGAGTTACAACAAGTTGGTAGAGAGGTACCCCCACATCAGACCGGATCACTTGATAGTGGTTATGAAACAGTTGATATTACATAAATATCCCCCTTCACTGGGCATGAGTGGTGGAAATGCACCAAATGCTGCTGATATACCTACTTTGCTAGGAACCGGTTCATTTTCACTGATTGGCAATGACAGAGAGGAAGGGATCAATAAAGCCAATCACCCCCCTGCTTATATGCGTTGGCCTCATATGAAAGCTGATCAGGTTCGTGGGCTAAGTTTGAGAGAAATAGGGGGTGGATTCTCTAGACATCAACGTGCCCCCTCTGTTCGTGCAGCATGCTACGTCATTGCTAAACCGTCGACAATGGTACAGAAGATGCAAAATGTCAAGAAGCTAAGGGGGCACCGAAATGCTGTTTACTGTGCAATATTTGATCGCTTGGGGAGGTATGTAATTACTGGTTCAGATGATCGTCTTGTAAAAATCTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGTGGACATGAAGGTGATATCACTGACTTGGCTGTGAGTTCCAACAATGCTGTGGTAGCGTCTTCTTCCAATGATTTTAATATCCGTGTTTGGCGTTTACTTGATGGGCAACCAATTGCAGTACTGCGAGGACATACTGGTGCTGTTACTGCCATTGCATTCAGTCCCAGGCTTGGTTATCAGCTTCTATCATCGTCTGATGATGGAACATGTAGGATGTGGGACCTTAGGAATTCTTCCCAGCATGCTGCTCGAATTTACATTCCGAGGCCTTCAGAAGCTGTGGCTGGAAGAAATAGTGGCCCTTCCTTGAGCACTGTTCCACAGGGCCATCAAATCTTTTGCTGTGCATTTAATGCTAATGGAACTATTTTTGTCACTGGTAGCTCAGACACTCTTGCGAGGGTGTGGAATGCTTGTAAACCAAATAGTGAAAATTCCGATCAACCCATTCATGAAATAGATGTCTTAGCTGGCCATGAGAATGATGTGAACTATGTTCAATTTAGTGGGTGTGCTGTAGCATCTAGATTTACTGCAGCTGATAAGGAAGTTAATGTTCACAAGCCTAAAAATATGTGGTTTAATTATGATAACATAGTTACCTGTTCCCGGGATGGGAGTGCAATTATTTGGGTCCCTAGGTCACGTAGATCACATGGGAAAGCTGGCCGATGGACCCGAGCCTATCATCTAAAAGTTCCTCCCCCACCAATGCCTCCACAACCTGCACGGGGAGGACCTCGTCAGAGGATTCTTCCGACTCCTCGTGGTGTTAATATGATTATCTGGAGCCTAGATAATCACTTTGTCCTTGCAGCCATTATGGATTGTAGAATATGCGTTTGGAATGCTTCTGATGGTAGCTTAGTGCACTCTTTGACGGGTCATACTGATTCTACATATGTTCTAGACGTACATCCTTTCAACCCAAGGATAGCAATGAGTGCTGGCTATGATGGAAAAACAATAATCTGGGATATTTGGGAAGGCACGCCTATTCGGACTTATGAAATTTCCCGCTTCAAACTGGTGGATGGGAAGTTCTCATCGGATGGGACATCAATTATACTTTCAGATGATGTTGGTCAGCTATATATATTAAGCACGGGACAAGGCGAGTCCCAAAAGGATGCTAAATATGACCAGTTCTTTCTTGGTGATTACCGCCCACTTATTCATGATACCCATGGGTCTGTAATTGACCAGGAAACTCAGCTGACTCCATACAATCGGAATATGCAAGATCTCCTATGTGACTCTGGCATGATACCCTACCCAGAACCTTATCAGAGCACATATCAACAAAGACGGTTAGGAGGTTTGAGAATTGAATGGAAGCCTTCTTCTCTTAAGTTTTCTGTTGGGCCTGACTTCAGTCTGGATCAGGATCACCAAATGCTGCCTTTGGTGGACTTAGATATGTTATTGAATAATCCACTGCCAGAGATTTTAGATGTCATGGATTGGGAGCCAGAAAATGAAGTTCAAAGTCATGATACTGATTCAGAATACAAAGTTATTGAAGATGACTCTTCCAGAGGCGAGCAGGGAAGTTTGAGTTCAAACTCCTCGGTTGACCCAGAAGGCAGTGATGAAGAAACTGTGGTCGAAGACCAAACAGTTAGTCTTCGGAGATCGAAAAGGAAACAAAGGAAGGGTGATATCGAGATCATGACTTCATCTGGAAGACGTGTTAAAAGGAGAAATTTGGAAGAGTGTGATGGCAATTCAGTTCGAGGTAACAGACCTAGGAATTCAAGAGCAGGTCATAAACATTCCAAGAAGAAATCAAAATCAAAGACATTTAGACCCCGAAGAGCTGCTGCACGCAATGCACTTCATTTGTTTTCTAAAATTACGGGAACATCTACAGATGGAGAGGATGAAGATGGTTCAGGACTTGATCTATCTGAGAGTGAGTCCTCATTGCAAGATTCTGACATTGAAAGTGATGAATCTGAAAAGTCCTTGCAAATCACAGCCCAAAGATCGAAAGGAAAGGAAGTGTTCCTTGATGAAACTGAGGATCTAAATGCTGCAAATAAGAGGTTGATTCTCAAATTTCCGAGTAGGTTTTCAACTAAGCATCTGCATCCAGCGAGTGCAATGAACTATTGTTCCAACCTGACTGAAGCTGTTGGCTCGTCGTCAAAAGTTCATTGTGAAGCCATTGAAGCGTATCAGAGTCGAACTAAGCTACAGAATCCTGAATATTCTTTTGATGAGGCAAACGCTACTGCAAGAGCAGGAGAGTTATTAGATAATGTTGAAGGTAATTTATGTCTGTCTGAGGCAAACCAAAATGGGAACATTAGATGGGGTGGGTCCAGGGCTCGTACATCCAAGTGTCTGAGAATGGGAGAAACTTTCTCTTCCGGTACCCATACAAGGTCTAGTGTGTGTCTGGATGGTGACATTCATGGACATTTACAACCAGAAAATAACTGCATTGCAATCTCTCCTCAATTGAAGATACACGGATATGGGGCTGAAATGGGCACAGGGGCCCTAATAGATACCTATGACAAAGCTTCCAATCCTCCCAAGGGTTTTCCAGTTGTGGCCAATGTTGAAAATCCCACATGTTCTAGCGATATTGGGGGTACTGGTGCATCGCCAAAAGTGGAACTCACAGGCCCTTTTGATACAACCCCCCAATCTATCCAGAAGGCTATCTGTGATGGTGTCATTCCAACCCCTATACAGATCGGGTTGAATGATACGGCCATGGATCCTGAAAGTACCAAGCTTGAGATGAATTATTTGCCTGAAAACTCCGTTACTGGTAATTATAGTTCCTTACCTGAATGTTCTTCACATCCATTTGTCACTCAGGTGGATAGGATGAATAGAAATAATTCAGACAACAGAAATGTTGGCTCACCTGAATCAGAAATTCTGATAGATAAAAAACCTCTACCAACTTCACAAGACTCAACAAAGCTGCATAGACCGATGGACAAAATGTACAGTGCTGTGTACAGAAGAACAAGATCACATAAAGGCCAGACCAACTTGGAAGGGGGTAACCGTATTGGAGAAAACGCTTCATGTTTGAGCAATAATAATCCCCACCTTGGAGTAGAAAGCAATGAAGATGTGTTTCACAGGACAAGATCCTCAAGGCAGAAGGTCTCCACGAACAGTCAAAATCATGTAAGCAACAATGTACAGCTGAGAGAAGAGGAGTTGGAGCCCACCTTAAGGCGTGTGCCAGATACTTCTGAAAATAGATGTCAACAACTTCTTCATCAAGAATGGGGATCAAGTTCAAGGATTACACTTGGATTGAGGTCTGCAAGAAATAGGAGATCCAACTACAATGCTCAGGACACAAGTCCAACAGAGAGGCAAAAGTCACGTCAACCTGCAAGAAAAGGATCATGGTTAATGATAACTGATCATGAATGTGGTTCCCGATATATTCCCCAGCTTGGGGATGAAGTTGCATATTTGAGACAGGGTCATCAGGAGTATTTAGATCGGCCAGATCGCCCCCCAAAAGAAGTGGGGCCATGGATGAGAATGAACATAAGAGCTGTGGAATTTTGTAAAGTTGTTGAGCTCAAGTATTCAACATTGTCTGGATCGGGGGATAGTAGCTGTATGATGTACCTCGAGTTTATAGATCCAACCTCTGACGTTTGTGGTAAATCCTTTAAATTGACTTTGACCGAAATGACTAGTTTTGCAGACTTTCTTGTCGAAAAAAGTAGATATGAGGCTTCTGTTCAGAGGAAGTGGACAAGCAGGAATAAGTGCAAAGTGTGGTGGAAAAATGAGGGTGAAGAAGATGGTAATTGGTGGCATGGCCGGGTGGTAAATGTACAGCCAAAATCTTCTGAATTTCCTGATAGTCCTTGGGAAATATACACCATACGGTATTACAAGGGTGATCCTCCAGCAACAATTTCGCATAGTCCTTGGGAGCTTTATGATGATGACACCCAGTGGGAACAGCCTCATATTAATGATGAGACCAAAGCTGAGCTACTTTCTGTCTTCAACGAGTTAGAGGAATCAGCTACTCAAAGCAAGGATCCTCTTGGGGTTGAAGATTTCCGGCGTATCTCAAAAATGGAAAAATTTAGGAACAGGTTTCCAGTTCCATTGTCTCTGGAAATGATCCAGGCAAGGCTAGAGAACGATTACTATCGAAGTTTGGAAGCTTTGGAGCATGACATGAACGTTATGCTATCAAATTTTGAGTCCCATGTAGTTAAGAACGAGAAAAAACTGTTGAGAAAAATTAAACGCCTGTCAGATTGGTGGGATCAGACAGTGTCCTCTTTACAGCGAAACGAGGATTGTAGAGAAGGCAGCCATTGA 5205 43.0 MTPSEGFARNMPVRKFVSSGDAPSISRKHISFPVKLYKESQLVEPETNHTVEPDLEIDIREVYFLIMHFLASGPCRRTSEQLCNELLEHQLLPKRYHAWYSRNGRCSGDEHDDGMSFPLSYNKLVERYPHIRPDHLIVVMKQLILHKYPPSLGMSGGNAPNAADIPTLLGTGSFSLIGNDREEGINKANHPPAYMRWPHMKADQVRGLSLREIGGGFSRHQRAPSVRAACYVIAKPSTMVQKMQNVKKLRGHRNAVYCAIFDRLGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFNIRVWRLLDGQPIAVLRGHTGAVTAIAFSPRLGYQLLSSSDDGTCRMWDLRNSSQHAARIYIPRPSEAVAGRNSGPSLSTVPQGHQIFCCAFNANGTIFVTGSSDTLARVWNACKPNSENSDQPIHEIDVLAGHENDVNYVQFSGCAVASRFTAADKEVNVHKPKNMWFNYDNIVTCSRDGSAIIWVPRSRRSHGKAGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNHFVLAAIMDCRICVWNASDGSLVHSLTGHTDSTYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGTPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIHDTHGSVIDQETQLTPYNRNMQDLLCDSGMIPYPEPYQSTYQQRRLGGLRIEWKPSSLKFSVGPDFSLDQDHQMLPLVDLDMLLNNPLPEILDVMDWEPENEVQSHDTDSEYKVIEDDSSRGEQGSLSSNSSVDPEGSDEETVVEDQTVSLRRSKRKQRKGDIEIMTSSGRRVKRRNLEECDGNSVRGNRPRNSRAGHKHSKKKSKSKTFRPRRAAARNALHLFSKITGTSTDGEDEDGSGLDLSESESSLQDSDIESDESEKSLQITAQRSKGKEVFLDETEDLNAANKRLILKFPSRFSTKHLHPASAMNYCSNLTEAVGSSSKVHCEAIEAYQSRTKLQNPEYSFDEANATARAGELLDNVEGNLCLSEANQNGNIRWGGSRARTSKCLRMGETFSSGTHTRSSVCLDGDIHGHLQPENNCIAISPQLKIHGYGAEMGTGALIDTYDKASNPPKGFPVVANVENPTCSSDIGGTGASPKVELTGPFDTTPQSIQKAICDGVIPTPIQIGLNDTAMDPESTKLEMNYLPENSVTGNYSSLPECSSHPFVTQVDRMNRNNSDNRNVGSPESEILIDKKPLPTSQDSTKLHRPMDKMYSAVYRRTRSHKGQTNLEGGNRIGENASCLSNNNPHLGVESNEDVFHRTRSSRQKVSTNSQNHVSNNVQLREEELEPTLRRVPDTSENRCQQLLHQEWGSSSRITLGLRSARNRRSNYNAQDTSPTERQKSRQPARKGSWLMITDHECGSRYIPQLGDEVAYLRQGHQEYLDRPDRPPKEVGPWMRMNIRAVEFCKVVELKYSTLSGSGDSSCMMYLEFIDPTSDVCGKSFKLTLTEMTSFADFLVEKSRYEASVQRKWTSRNKCKVWWKNEGEEDGNWWHGRVVNVQPKSSEFPDSPWEIYTIRYYKGDPPATISHSPWELYDDDTQWEQPHINDETKAELLSVFNELEESATQSKDPLGVEDFRRISKMEKFRNRFPVPLSLEMIQARLENDYYRSLEALEHDMNVMLSNFESHVVKNEKKLLRKIKRLSDWWDQTVSSLQRNEDCREGSH 1734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 516332 526215 + Conep04aG0011200.1 Cone4ag0108 435086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 324 - -
Cone4ag0108 1734 FunFam PH-interacting protein isoform X1 224 392 - -
Cone4ag0108 1734 Gene3D - 219 389 IPR015943 GO:0005515(InterPro)
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 1390 1409 - -
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 290 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 627 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 876 899 - -
Cone4ag0108 1734 SMART WD40_4 537 575 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 SMART WD40_4 326 366 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 SMART WD40_4 578 618 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 SMART WD40_4 391 429 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 SMART WD40_4 284 323 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 SMART WD40_4 242 281 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 SMART WD40_4 441 504 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 Gene3D - 541 723 IPR015943 GO:0005515(InterPro)
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 1390 1419 - -
Cone4ag0108 1734 SUPERFAMILY Bromodomain 1658 1695 IPR036427 GO:0005515(InterPro)
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 375 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 FunFam WD40 domain-containing protein 393 473 - -
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 284 - -
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 369 - -
Cone4ag0108 1734 Pfam Bromodomain 1651 1693 IPR001487 GO:0005515(InterPro)
Cone4ag0108 1734 FunFam PH-interacting protein isoform X1 478 676 - -
Cone4ag0108 1734 Gene3D - 1614 1733 IPR036427 GO:0005515(InterPro)
Cone4ag0108 1734 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 332 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 Pfam WD domain, G-beta repeat 399 429 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 Pfam WD domain, G-beta repeat 245 281 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 Pfam WD domain, G-beta repeat 327 366 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 Pfam WD domain, G-beta repeat 579 618 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 PANTHER WD REPEAT DOMAIN 9 50 1721 IPR052060 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0007010(PANTHER)|GO:0008360(PANTHER)
Cone4ag0108 1734 SUPERFAMILY WD40 repeat-like 240 661 IPR036322 GO:0005515(InterPro)
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 805 821 - -
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 785 804 - -
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 829 870 - -
Cone4ag0108 1734 CDD WD40 245 618 - -
Cone4ag0108 1734 Gene3D - 393 530 IPR015943 GO:0005515(InterPro)
Cone4ag0108 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 429 IPR001680 GO:0005515(InterPro)
Cone4ag0108 1734 ProSitePatterns Trp-Asp (WD) repeats signature. 353 367 IPR019775 -
Cone4ag0108 1734 MobiDBLite consensus disorder prediction 785 957 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0108 K11797 - - csv:101214610 1996.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0690 Cone-Chr11:4691851 Cone4ag0108 Cone-Chr4:516332 0 wgd
Cone18ag0742 Cone-Chr18:4057900 Cone4ag0108 Cone-Chr4:516332 1.98E-76 wgd
Cone4ag0108 Cone-Chr4:516332 Cone7ag0105 Cone-Chr7:448722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41