Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0116 ATGAAGATCAGCGTAAGTAGGGAGACGAGGAAGATCGAGGTGGATAATCGGATTCCTCTCCATAAATACTATCGGATCGCTGACAACCTTCTCAAGCAGGCGAGGATTTATCGGGAAGAGGGGAATGTTGTAGATTTGTTTATAATGCTACTTAGATTTTCAAGTTTAGTTTCCGAAACTATACCGCGCCATCGGGATTACCAGACTCTTTCACCCAAAGGAAAAGCATTTTACAAAAAGAAACTGTTAAATGTGATGGACGAGGTTGAATCTATAAAACCTGAATTTGATCGCCGGGTAAGGGAACTGGAAAAGGAGCATAGTTCTCAGCTGTCTCAACTTGATGGCCCACAAAGGATTTCAGACGGTTCGCAGACTCTGTCTTTGGAATGGCCCCCTCTGAATAGAAAATATTCCTCGACCTTTCATGTCAAGCAGCCTGCCAGCTTAGCATCGCAGTCTTTATGGAAGTATAACTATGGCCATGGTCGAGTTTCATCATCAAATTCCTCACAAATAAACAAGCAGATGCAGAGACTATCTCTCAATGTGCCTCATCCAAAACCAGAAACTTTGTCTAGACATTCCTTTTTAGGCCCAAATGGTCTGCAGGGACAGTGGACCGGTCCTACTAGGGATAAGATTGAATATCCTAGGAATCAGGATTTTGCCTCAGAAAGTTCAAGACAGAATGTAGATGGACAGTATGATCTTGCGGCACTTAAAGATGGGGATCCAGGAGGGGTTGGATCCACAATGGAGTCCGTGCTATCATTGGGTGATGGTAATTGGGTACATCCTGTAGAGGATTCGTGCTCTCCTTCAGTAACAGAAATAAGGGAAGACCTTCAGATGGCCAGATTTAAACAACCTTCTCCTCCACCTGTTCTTGCTCAGCTGCATCAGGGTTTTGCTCAAATTCCTCCTTCTAAAGTTGCAGACCCAAGACCTGGATTAGCGACGCCTTCATCTGATGGATCTGATTCATTTCAACATTTACATATCCCAGTAAAAATGTTGCAAGATTTTTTGAGGTTGGCCCTGGCAAATACAAAAAGGAATCTGGAGACATGTGGTGTTCTTGCAGGATCATTGAAAAAAAGGGTTTTCCATATAACAACACTTATTATCCCAAAGCAGGAGTCAACTTCCGATTCGTGTCAAACATTGAATGAAGAAGAAATTTTTGAAGTTCAAGACAGATTATCGCTTTTTCCTCTTGGTTGGATACATACACACCCTTCACAGACCTGTTTCATGTCATCAGTTGATTTACACACTCATTACTCATACCAGGTTATGTTACCAGAAGCAATTGCAATTGTCATGGCCCCTACAGATTCATCCTGTGGCATGTCCGTAATCCGCAACTGCCAACAACGTGGGTTTCATCCTCACGAGGAGCCTTCGGATGGAAGTCCAATTTATGAACACTGTTCTCATGTCTATATGAACACTAATTTGAAGTATGATGTCATGGATCTTCGCTAG 1491 42.72 MKISVSRETRKIEVDNRIPLHKYYRIADNLLKQARIYREEGNVVDLFIMLLRFSSLVSETIPRHRDYQTLSPKGKAFYKKKLLNVMDEVESIKPEFDRRVRELEKEHSSQLSQLDGPQRISDGSQTLSLEWPPLNRKYSSTFHVKQPASLASQSLWKYNYGHGRVSSSNSSQINKQMQRLSLNVPHPKPETLSRHSFLGPNGLQGQWTGPTRDKIEYPRNQDFASESSRQNVDGQYDLAALKDGDPGGVGSTMESVLSLGDGNWVHPVEDSCSPSVTEIREDLQMARFKQPSPPPVLAQLHQGFAQIPPSKVADPRPGLATPSSDGSDSFQHLHIPVKMLQDFLRLALANTKRNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDSSCGMSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNTNLKYDVMDLR 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 549411 553268 + Conep04aG0012000.1 Cone4ag0116 435094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0116 496 Coils Coil 86 106 - -
Cone4ag0116 496 CDD MPN_AMSH_like 331 496 IPR044098 GO:0016579(InterPro)|GO:0061578(InterPro)|GO:0070536(InterPro)|GO:0140492(InterPro)
Cone4ag0116 496 ProSiteProfiles MPN domain profile. 333 461 IPR037518 -
Cone4ag0116 496 Pfam USP8 dimerisation domain 8 99 IPR015063 -
Cone4ag0116 496 Gene3D Cytidine Deaminase, domain 2 319 496 - -
Cone4ag0116 496 PANTHER AMSH-LIKE PROTEASE 3 496 - GO:0005768(PANTHER)|GO:0016020(PANTHER)|GO:0070536(PANTHER)|GO:0071108(PANTHER)
Cone4ag0116 496 MobiDBLite consensus disorder prediction 192 213 - -
Cone4ag0116 496 SMART pad1_6 332 471 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone4ag0116 496 MobiDBLite consensus disorder prediction 103 122 - -
Cone4ag0116 496 SUPERFAMILY JAB1/MPN domain 332 445 - -
Cone4ag0116 496 Gene3D - 3 119 - -
Cone4ag0116 496 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 437 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0116 K11866 - - csv:101209152 672.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0305 Cone-Chr13:2383148 Cone4ag0116 Cone-Chr4:549411 1.05E-78 dispersed
Cone4ag0116 Cone-Chr4:549411 Cone7ag0112 Cone-Chr7:480710 5.09e-319 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008620 2 1 1 1 1 1 2 0 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34