Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0123 ATGAATTTGAGTTCCAGTAACGGATCAATGATGTCACCGGAAAGTTCAAGTGCCGGTTGGGTAGTTGGTGAGGTTGTCTCCAACCAGTTTCCGGCTGGTCTACGTGTCCTTGTTGTAGATGATGATCGACCCACTCTTCTGATCTTGGACAAGATGCTTCGTACCTGCCTCTATGATGTGAGAACATGTAATAGAGCAGAGGAGGCACTGTCTCTTCTTCGAGGCAACAAAAACGGGTTTGACATCGTTCTAAGCGACGTCCACATGCCCGATATGGACGGATTCAAGCTCCTCGAGCACATCGGCTTAGAGATGGACTTACCTGTTATCATGATGTCTATGGATGCCGGGAAAGATGTGGTTATGAAAGGGATAACTCATGGTGCTTGTGATTATTTGATAAAACCCGTTTCGCTTGTGGCTTTGAAGAACATATGGCAGCACGTAGTTCGGAAGAAGAAGAATGAGTGGAAGGACTTGGATCAACCAGAAAGCGCGGATAAATATGGAGACTGGCAACAAAAACCAATTGGAGATGTGGATTATTCATCCTCTGCAAATGAAGGAAGTTGCAGAAGTGCAAAGAGGAAGAAGGACGATGAAGAAGAGCCCGAGGAGAAGGACGACTCCTCCGCATTGAAAAAGCCAAGGGTGGTTTGGTCAGTTGAGCTGCATCAACAGTTTGTGGGGGCTGTGAATCAACTTGGCATTGACAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAACGTTGCGGGACTAACAAGAGAAAATGTTGCAAGTCATCTTCAGAAATATCGGCTCTATCTTAGAAGGCTAAGTGGAGTTTCTTCACATCATCAGAATAATTTGGCCAACTCTTTCCTCAACCCACAAGAAGCAGCTCTCGGATCGATCTCATCCCTTAACGGATTTCACCTTCAAACTCTTGCCGTTACCAGCCAAATGCAAGGACAAAGTGTAGTCACGCCAAATCCAGGCATGTCTACTATGTCTGTTGCCAATCAGAGGAACCTCTTTAGCTTCGAAAATCCAAAGTTAAATTCGAACACGTCTAAACCAATAAATTTACTTCACGGAATCTCAACAACTTTGGGGTCTAAACATCTTCCGAATTTGCACCATTCTCTACAATCTCATGGAAGCATGATAACCCAGATGCCTCGACCACAAGCTAGTGCACGTATTTTGAACGAAACTACTAGCACTAACTCTAATATACGAAGGCTTCCCTCATCTATAGGGCAGCCAATTTTCTCAAACGGCATTGCTAATGGTGGTGTTGTGACGAGAAATGGGGCAGGATTTAATCTAGTTCCATCTACCTCATCGATATTAAATTCAGGCATAAGTCATCAAACTGTAGAACTTCCTGGTAATAGTTTTCCGCTTCAAAGTAGTCCTTCAGGGATGTCAACTCTCACACCAAAAGAAGGTTTCACACAAGAGTTATCGAACTCGGACGTCAGAGGGTCTGGAGGATTCTTTCAAAGTTATGATGTGTTTAGTGGTTTGACTCAGCAGAACTCAAATGATCGGGACTTGCATTATAATGTAGGCTTGAGTTTTGACCCATCTCCGAACTCGAACCAGATTAGACCCAGCCTCGATGTTTCACCATTGGGTTTAGTTCATGAAGGCTTTTCTTCGGGCAGAACTGGACCAACCACACTTGTTGGAGGTAACTCAATGAGCGTAAAAGCAGAAAAAATTCCGGATTCAAGCCTTCAGATTGGTGGCATCTTAGGTGGAAACTTTGGGCAGGAAGATGTTTTGAGTGCACTTTTTGAACAGGAATACATTGGAGCGGCTGAAACAGAGTTCGACTTTGATGGGATTTGCATCGATAATATTTCTGTGTAA 1863 43.91 MNLSSSNGSMMSPESSSAGWVVGEVVSNQFPAGLRVLVVDDDRPTLLILDKMLRTCLYDVRTCNRAEEALSLLRGNKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSMDAGKDVVMKGITHGACDYLIKPVSLVALKNIWQHVVRKKKNEWKDLDQPESADKYGDWQQKPIGDVDYSSSANEGSCRSAKRKKDDEEEPEEKDDSSALKKPRVVWSVELHQQFVGAVNQLGIDKAVPKKILELMNVAGLTRENVASHLQKYRLYLRRLSGVSSHHQNNLANSFLNPQEAALGSISSLNGFHLQTLAVTSQMQGQSVVTPNPGMSTMSVANQRNLFSFENPKLNSNTSKPINLLHGISTTLGSKHLPNLHHSLQSHGSMITQMPRPQASARILNETTSTNSNIRRLPSSIGQPIFSNGIANGGVVTRNGAGFNLVPSTSSILNSGISHQTVELPGNSFPLQSSPSGMSTLTPKEGFTQELSNSDVRGSGGFFQSYDVFSGLTQQNSNDRDLHYNVGLSFDPSPNSNQIRPSLDVSPLGLVHEGFSSGRTGPTTLVGGNSMSVKAEKIPDSSLQIGGILGGNFGQEDVLSALFEQEYIGAAETEFDFDGICIDNISV 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 575340 578379 - Conep04aG0012700.1 Cone4ag0123 435101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0123 620 SUPERFAMILY CheY-like 33 155 IPR011006 -
Cone4ag0123 620 SMART REC_2 34 146 IPR001789 GO:0000160(InterPro)
Cone4ag0123 620 FunFam Two-component response regulator 211 274 - -
Cone4ag0123 620 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Cone4ag0123 620 Gene3D - 34 188 - -
Cone4ag0123 620 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 336 IPR045279 GO:0009736(InterPro)
Cone4ag0123 620 MobiDBLite consensus disorder prediction 160 212 - -
Cone4ag0123 620 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677(InterPro)
Cone4ag0123 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Cone4ag0123 620 SUPERFAMILY Homeodomain-like 213 272 IPR009057 -
Cone4ag0123 620 CDD REC_typeB_ARR-like 36 150 - -
Cone4ag0123 620 PIRSF RR_ARR_type-B 7 610 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone4ag0123 620 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160(InterPro)
Cone4ag0123 620 Gene3D - 212 274 - -
Cone4ag0123 620 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160(InterPro)
Cone4ag0123 620 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0123 Cone-Chr4:575340 Cone7ag1672 Cone-Chr7:11219297 1.11E-83 dispersed
Cone14ag0738 Cone-Chr14:4109366 Cone4ag0123 Cone-Chr4:575340 7.18E-155 wgd
Cone15ag0748 Cone-Chr15:4345184 Cone4ag0123 Cone-Chr4:575340 9.29E-164 wgd
Cone4ag0123 Cone-Chr4:575340 Cone7ag0120 Cone-Chr7:505034 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45894 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0123 K14491 - mdm:103403691 656.366