Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0123 | ATGAATTTGAGTTCCAGTAACGGATCAATGATGTCACCGGAAAGTTCAAGTGCCGGTTGGGTAGTTGGTGAGGTTGTCTCCAACCAGTTTCCGGCTGGTCTACGTGTCCTTGTTGTAGATGATGATCGACCCACTCTTCTGATCTTGGACAAGATGCTTCGTACCTGCCTCTATGATGTGAGAACATGTAATAGAGCAGAGGAGGCACTGTCTCTTCTTCGAGGCAACAAAAACGGGTTTGACATCGTTCTAAGCGACGTCCACATGCCCGATATGGACGGATTCAAGCTCCTCGAGCACATCGGCTTAGAGATGGACTTACCTGTTATCATGATGTCTATGGATGCCGGGAAAGATGTGGTTATGAAAGGGATAACTCATGGTGCTTGTGATTATTTGATAAAACCCGTTTCGCTTGTGGCTTTGAAGAACATATGGCAGCACGTAGTTCGGAAGAAGAAGAATGAGTGGAAGGACTTGGATCAACCAGAAAGCGCGGATAAATATGGAGACTGGCAACAAAAACCAATTGGAGATGTGGATTATTCATCCTCTGCAAATGAAGGAAGTTGCAGAAGTGCAAAGAGGAAGAAGGACGATGAAGAAGAGCCCGAGGAGAAGGACGACTCCTCCGCATTGAAAAAGCCAAGGGTGGTTTGGTCAGTTGAGCTGCATCAACAGTTTGTGGGGGCTGTGAATCAACTTGGCATTGACAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAACGTTGCGGGACTAACAAGAGAAAATGTTGCAAGTCATCTTCAGAAATATCGGCTCTATCTTAGAAGGCTAAGTGGAGTTTCTTCACATCATCAGAATAATTTGGCCAACTCTTTCCTCAACCCACAAGAAGCAGCTCTCGGATCGATCTCATCCCTTAACGGATTTCACCTTCAAACTCTTGCCGTTACCAGCCAAATGCAAGGACAAAGTGTAGTCACGCCAAATCCAGGCATGTCTACTATGTCTGTTGCCAATCAGAGGAACCTCTTTAGCTTCGAAAATCCAAAGTTAAATTCGAACACGTCTAAACCAATAAATTTACTTCACGGAATCTCAACAACTTTGGGGTCTAAACATCTTCCGAATTTGCACCATTCTCTACAATCTCATGGAAGCATGATAACCCAGATGCCTCGACCACAAGCTAGTGCACGTATTTTGAACGAAACTACTAGCACTAACTCTAATATACGAAGGCTTCCCTCATCTATAGGGCAGCCAATTTTCTCAAACGGCATTGCTAATGGTGGTGTTGTGACGAGAAATGGGGCAGGATTTAATCTAGTTCCATCTACCTCATCGATATTAAATTCAGGCATAAGTCATCAAACTGTAGAACTTCCTGGTAATAGTTTTCCGCTTCAAAGTAGTCCTTCAGGGATGTCAACTCTCACACCAAAAGAAGGTTTCACACAAGAGTTATCGAACTCGGACGTCAGAGGGTCTGGAGGATTCTTTCAAAGTTATGATGTGTTTAGTGGTTTGACTCAGCAGAACTCAAATGATCGGGACTTGCATTATAATGTAGGCTTGAGTTTTGACCCATCTCCGAACTCGAACCAGATTAGACCCAGCCTCGATGTTTCACCATTGGGTTTAGTTCATGAAGGCTTTTCTTCGGGCAGAACTGGACCAACCACACTTGTTGGAGGTAACTCAATGAGCGTAAAAGCAGAAAAAATTCCGGATTCAAGCCTTCAGATTGGTGGCATCTTAGGTGGAAACTTTGGGCAGGAAGATGTTTTGAGTGCACTTTTTGAACAGGAATACATTGGAGCGGCTGAAACAGAGTTCGACTTTGATGGGATTTGCATCGATAATATTTCTGTGTAA | 1863 | 43.91 | MNLSSSNGSMMSPESSSAGWVVGEVVSNQFPAGLRVLVVDDDRPTLLILDKMLRTCLYDVRTCNRAEEALSLLRGNKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSMDAGKDVVMKGITHGACDYLIKPVSLVALKNIWQHVVRKKKNEWKDLDQPESADKYGDWQQKPIGDVDYSSSANEGSCRSAKRKKDDEEEPEEKDDSSALKKPRVVWSVELHQQFVGAVNQLGIDKAVPKKILELMNVAGLTRENVASHLQKYRLYLRRLSGVSSHHQNNLANSFLNPQEAALGSISSLNGFHLQTLAVTSQMQGQSVVTPNPGMSTMSVANQRNLFSFENPKLNSNTSKPINLLHGISTTLGSKHLPNLHHSLQSHGSMITQMPRPQASARILNETTSTNSNIRRLPSSIGQPIFSNGIANGGVVTRNGAGFNLVPSTSSILNSGISHQTVELPGNSFPLQSSPSGMSTLTPKEGFTQELSNSDVRGSGGFFQSYDVFSGLTQQNSNDRDLHYNVGLSFDPSPNSNQIRPSLDVSPLGLVHEGFSSGRTGPTTLVGGNSMSVKAEKIPDSSLQIGGILGGNFGQEDVLSALFEQEYIGAAETEFDFDGICIDNISV | 620 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 575340 | 578379 | - | Conep04aG0012700.1 | Cone4ag0123 | 435101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0123 | 620 | SUPERFAMILY | CheY-like | 33 | 155 | IPR011006 | - | |
Cone4ag0123 | 620 | SMART | REC_2 | 34 | 146 | IPR001789 | GO:0000160(InterPro) | |
Cone4ag0123 | 620 | FunFam | Two-component response regulator | 211 | 274 | - | - | |
Cone4ag0123 | 620 | Pfam | Myb-like DNA-binding domain | 217 | 267 | IPR001005 | - | |
Cone4ag0123 | 620 | Gene3D | - | 34 | 188 | - | - | |
Cone4ag0123 | 620 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 32 | 336 | IPR045279 | GO:0009736(InterPro) | |
Cone4ag0123 | 620 | MobiDBLite | consensus disorder prediction | 160 | 212 | - | - | |
Cone4ag0123 | 620 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 215 | 268 | IPR006447 | GO:0003677(InterPro) | |
Cone4ag0123 | 620 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 214 | 271 | IPR017930 | - | |
Cone4ag0123 | 620 | SUPERFAMILY | Homeodomain-like | 213 | 272 | IPR009057 | - | |
Cone4ag0123 | 620 | CDD | REC_typeB_ARR-like | 36 | 150 | - | - | |
Cone4ag0123 | 620 | PIRSF | RR_ARR_type-B | 7 | 610 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cone4ag0123 | 620 | Pfam | Response regulator receiver domain | 36 | 144 | IPR001789 | GO:0000160(InterPro) | |
Cone4ag0123 | 620 | Gene3D | - | 212 | 274 | - | - | |
Cone4ag0123 | 620 | ProSiteProfiles | Response regulatory domain profile. | 35 | 150 | IPR001789 | GO:0000160(InterPro) | |
Cone4ag0123 | 620 | MobiDBLite | consensus disorder prediction | 191 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag0123 | Cone-Chr4:575340 | Cone7ag1672 | Cone-Chr7:11219297 | 1.11E-83 | dispersed | |
Cone14ag0738 | Cone-Chr14:4109366 | Cone4ag0123 | Cone-Chr4:575340 | 7.18E-155 | wgd | |
Cone15ag0748 | Cone-Chr15:4345184 | Cone4ag0123 | Cone-Chr4:575340 | 9.29E-164 | wgd | |
Cone4ag0123 | Cone-Chr4:575340 | Cone7ag0120 | Cone-Chr7:505034 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45894 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0123 | K14491 | - | mdm:103403691 | 656.366 |