Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0134 ATGAATTCGAATTTTGGAAAGGACTTCGATTTCGATCTCGGAATCGGTTCCTCCCGCCCCAAATCTCTCAAGGAGCAGAAAAACCCCGCCCCCTCCTATTCTTCGTATTCTTCTTCCACTTTTTCTTTTACCACGCAAACGAAACCTGCTTGGCAATCGAATAAGCCGTCTTGGACTCATCAGCCTGCGCCAAATCAGGCCATCCGGCCCAGCCTGCCGACAGGACCCACTTCTATGGTCGGCGATATCTCCGGGAGGAGTTGGGGTTCGACGGTGCAAACAAGTTCCAGCTCAGGTATTGGAATTGTAGATAAGAATCCGAATTTGTTTGGTGATTTGGTCGGTTCTGCTTTGGGGCAGGGTAAGAGTAATAGCAATGTTCCTTTGAAGAGTGTTACGCCATCATCCATGGCATCTTCTGCCCCGCCCAGTAAGAGTTCGTTTTCGATGGGAAATATGGCTAACTCATTGCCCAAAACTGGCACTAATTCTGTGAAAAGTAGTCCTAGTGGATATAATAATACTAACGGAATTAATGCTCAAACGAGTCCGAATCTTGGAGGTCCTTTGAGTCGTAATATGGGTGGTGGCACCGGCACCGGCATTGCAGGTGGAATCAGCTCCAAAAAGGATCCATTTGGTTCTTTGGTCGATTTTGGATCGAAGCAACCTGGAAGCCTAAATTCAACAACTAAAAGCAATAAGAGTAATACTGAAGATGATAGTTTTGGGGATTTCCAAAATGCACCGAAATCGAACACAACTTCTACATTCCCGTCAAGTGGTTTTAATGACAATAATTTTGGTTTTACAGGATCAAATGTGGGTTCTAATTCAAGAATGGATGATTTTGGGATGCCCAATTTGGATTTTGCTTCTAAGAATCAAGCTCCTGTACAATCTGTTGGAAGTGATCCATTGGATTTGTTGTTTAGCTCGTCCTCAGCTCCAGCTAGGGGTTCTGAAGGATTTTCTGGGCAACAATCGTCTGAGGTTGATGATTGGGGAATGGATTCAGAGTTTGGAGGAGGTGGTCATGATATGGGTGGGTCCACAACTGAGATTGAAGGGCTTCCGCCTCCTCCTGCTGGGGTGACAGGATCATCTGCAAAGAACAAGGGAATGAATAACTACAAGCAGGGACAATATGCTGATGCTATCAAGTGGCTTTCTTGGGCCCTCGTTCTTTTTGAGAAAGGAGGTGATAGTGCTGCCACAATGGAGGTTTTGTCCAGCAGAGCTTCATGTTACAAGGAAGTAGGGGAGTATAAGAAAGCTGTGGCAGATTGTACAAAGGTTCTAGAACACAACGACGCAAATGTTGCTGGCCTCGTCCAACGTGCACTTCTATACGAAAGTATGGAAAAGTACAAGCTCGGGGCAGAGGACCTCAGGACTGTGTTGAAGTTTGATCCTGGAAACAGGATCGCAAGAAGCACCATTCATCGCCTGACAAAAATGGCAGAATAG 1470 45.78 MNSNFGKDFDFDLGIGSSRPKSLKEQKNPAPSYSSYSSSTFSFTTQTKPAWQSNKPSWTHQPAPNQAIRPSLPTGPTSMVGDISGRSWGSTVQTSSSSGIGIVDKNPNLFGDLVGSALGQGKSNSNVPLKSVTPSSMASSAPPSKSSFSMGNMANSLPKTGTNSVKSSPSGYNNTNGINAQTSPNLGGPLSRNMGGGTGTGIAGGISSKKDPFGSLVDFGSKQPGSLNSTTKSNKSNTEDDSFGDFQNAPKSNTTSTFPSSGFNDNNFGFTGSNVGSNSRMDDFGMPNLDFASKNQAPVQSVGSDPLDLLFSSSSAPARGSEGFSGQQSSEVDDWGMDSEFGGGGHDMGGSTTEIEGLPPPPAGVTGSSAKNKGMNNYKQGQYADAIKWLSWALVLFEKGGDSAATMEVLSSRASCYKEVGEYKKAVADCTKVLEHNDANVAGLVQRALLYESMEKYKLGAEDLRTVLKFDPGNRIARSTIHRLTKMAE 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 609926 612283 - Conep04aG0013900.1 Cone4ag0134 435112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0134 489 Gene3D Tetratricopeptide repeat domain 367 489 IPR011990 GO:0005515(InterPro)
Cone4ag0134 489 MobiDBLite consensus disorder prediction 296 334 - -
Cone4ag0134 489 MobiDBLite consensus disorder prediction 119 189 - -
Cone4ag0134 489 PANTHER OS03G0340700 PROTEIN 7 489 - -
Cone4ag0134 489 MobiDBLite consensus disorder prediction 119 265 - -
Cone4ag0134 489 MobiDBLite consensus disorder prediction 221 265 - -
Cone4ag0134 489 MobiDBLite consensus disorder prediction 21 76 - -
Cone4ag0134 489 SMART tpr_5 367 400 IPR019734 GO:0005515(InterPro)
Cone4ag0134 489 SMART tpr_5 441 474 IPR019734 GO:0005515(InterPro)
Cone4ag0134 489 SMART tpr_5 407 440 IPR019734 GO:0005515(InterPro)
Cone4ag0134 489 MobiDBLite consensus disorder prediction 296 358 - -
Cone4ag0134 489 MobiDBLite consensus disorder prediction 1 76 - -
Cone4ag0134 489 SUPERFAMILY TPR-like 371 481 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0134 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0379 Cone-Chr3:1917856 Cone4ag0134 Cone-Chr4:609926 9.99E-06 dispersed
Cone4ag0134 Cone-Chr4:609926 Cone7ag0129 Cone-Chr7:542985 1.84E-275 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g147 . . . . . . . . . . Cma06g01542 Cma14g01607 . Car14g01426 . Cpe08g00170 Cpe03g01349 . . . . . . . . . . . . . . . . Cone7ag0129 Cone4ag0134 . . . . . . . Bda13g00198 . . Bma02g00918 . . . Cmo14g01643 . . . . . . . . . . . . . . . . . . . . . Csa03g01491 Chy06g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34