Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0136 ATGGACACCACAGGAGGATCAAGAGCTGTCTTTCTTATATTGCTCTTTTCAGCTCTGGCCGACTGTGTGGTCCACGGGGAAAAGGTGTTCAACGTGCTCGACAACGGTGCAAAAGCCGGCGGAAAGTCAGCCAACAAAGAGAGCAATTCACTTGCATTCATTAAGACATGGAATGCTGCTTGCAAGTCAGGGGGTCCCGCCAGAGTTTTGATTCCCGCCGGTCAATTCTTGTTAAGCCAAGTCGTTTTCGCTGGGCCATGCACAGCGGCTGAGATCATTGTTGAGATCGCCGGCACATTGCTCGCCAGCACAGACGTTAGTGATTTCTCTTCGCCAGAGTGGATCTCGTTTGAACTGGTGACCGGAGTTACAATACTCGGAGGAGGAACTTTAAATGGTCAGGGTGAACAAGTTTGGAAATATAATAACTGCGCGGGCAACAAGGAAGGTTGCTCCATTCTCTGCGTGTCTTTGAAATTCCTAGGTTCGAAAAATGTAGTATTGAAAGGCATCAAGTTTGTCAACAGCCAAGGATTCCACATCGGTGTTACAGAATCGTCCAATATCCGGGTCGAGGGTGTCCACATCACCGCTCCGGCGGATAGCCCCAACACAGATGGCATCCATATTAGTCGAACAGACGGCGTTATAATTACCAACTCTGTCATCGGAACCGGAGATGATTGCGTCTCTATCGGTGAAGGATCCACTAACGTCGAAGTCAGCAGTATCAAATGCGGTCCCGGACATGGCATCAGTGTCGGAAGCCTAGGAAAGCGTCAAGGCGAGAAAGCGGTGAAGGGCGTGACGGTAGCTAACTGCACCTTGATAGACGCTGATAATGGTGCTAGAATCAAGACATGGCCAGCTTCACCATCAGCTAATACAGCTTCCGGTATCGTCTTCAAAGACATCACGATGACTAATGTCAGGCGCCCCATTATCATTGACCAAGAGTACAGCTGTGGGTCGAAAGTTTGCAGTAAGCCTCCATCTAAAGTGAAGCTGAGCGACATTCATTTCATTAACATCAAAGGAACGGCATCCGATAGAGCTGCGGCTATCACGATCAAATGCAGCAAGGGATTACCATGTGACGGCGTAGAGCTGAAAAACGTGGACTTGACAGGCGCTGCCGAAACCCTGTGCTCTAATGCGAAAGTCATAACCACTGGCACAGTGAACCCACCACTCAGTTGCCAGTGA 1206 49.5 MDTTGGSRAVFLILLFSALADCVVHGEKVFNVLDNGAKAGGKSANKESNSLAFIKTWNAACKSGGPARVLIPAGQFLLSQVVFAGPCTAAEIIVEIAGTLLASTDVSDFSSPEWISFELVTGVTILGGGTLNGQGEQVWKYNNCAGNKEGCSILCVSLKFLGSKNVVLKGIKFVNSQGFHIGVTESSNIRVEGVHITAPADSPNTDGIHISRTDGVIITNSVIGTGDDCVSIGEGSTNVEVSSIKCGPGHGISVGSLGKRQGEKAVKGVTVANCTLIDADNGARIKTWPASPSANTASGIVFKDITMTNVRRPIIIDQEYSCGSKVCSKPPSKVKLSDIHFINIKGTASDRAAAITIKCSKGLPCDGVELKNVDLTGAAETLCSNAKVITTGTVNPPLSCQ 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 617739 619158 - Conep04aG0014100.1 Cone4ag0136 435114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0136 401 SUPERFAMILY Pectin lyase-like 15 400 IPR011050 -
Cone4ag0136 401 ProSitePatterns Polygalacturonase active site. 243 256 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cone4ag0136 401 Gene3D - 23 397 IPR012334 -
Cone4ag0136 401 SMART pbh1 213 234 IPR006626 -
Cone4ag0136 401 SMART pbh1 297 318 IPR006626 -
Cone4ag0136 401 SMART pbh1 163 183 IPR006626 -
Cone4ag0136 401 SMART pbh1 266 287 IPR006626 -
Cone4ag0136 401 SMART pbh1 186 212 IPR006626 -
Cone4ag0136 401 SMART pbh1 331 359 IPR006626 -
Cone4ag0136 401 PANTHER - 30 387 - -
Cone4ag0136 401 FunFam Pectin lyase-like superfamily protein 19 397 - -
Cone4ag0136 401 Pfam Glycosyl hydrolases family 28 61 388 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0136 K01213 - - csv:101212922 379.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0136 Cone-Chr4:617739 Cone8ag1394 Cone-Chr8:11000287 8.76E-99 dispersed
Cone4ag0136 Cone-Chr4:617739 Cone7ag0131 Cone-Chr7:549866 2.26E-228 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g150 . . . . . . . . . . . . . Car14g01428 . . . . . . . . . . . . . . . . . . . Cone7ag0131 Cone4ag0136 . . . . . . . . . Bpe13g00673 . Bma06g01491 . . Cmo14g01646 . . . . . . . . . . . . . . . . . . . . . . Chy06g00727 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000368 1 4 0 3 4 5 5 3 3 8 3 4 4 4 4 5 4 2 4 3 2 3 3 8 11 6 8 2 6 2 124