Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0137 ATGCCGAACGGGACCAACAATGCTTCTGGAAAAAAGAAGAAGATCGCCCTGCTAAGTGTGGGCTCTGTACTTCTGGTGGCAATGGTGGTAGCCGTTGCAGTTGGGCTCAGCGGAGGAAAACAGTCAAAGGGTCGTGGTGAAGGTAGCAATGACATCTCCACCTCAACAAAAGCGGTTAAGGCCGTGTGTGAGCCGACCGACTACAAAGAAACATGCGAGAAAACCCTCACCTCGGCTGCCGGAAACACATCCGACCCCAAAGAGCTAATCAAAACCGGGTTTAAAGTCGCTGTAGACTATCTCGAAGGAGCTGTCCACAACTCGAGTGTGGTTGCAGAGTTGGCCAAAGATCCCATGACCAACCAAGCGCTCCAAAACTGCAAGGAATTGATTGGGTACTCGGTCGACGATATCAACGACTCGATCGACCGGCTTGGGTCATTCGACATTGCCAATTTTGATGATTATGTTGCGGACATGAAGGTGTGGCTCACTGGGGCCGTCACCTTCATCGAGACATGCCAGGACGGATTCGAGAACACAACAGGTAAAGCCGGGGACAAAATGAAGGAGCTTTTGAAAACCGGAAGAGAACTCACTTTCAATGCCCTCGCAATGGTTTCACAAATCACATCCGTGTTGACTTCCCTTCATATCCCAACAAGCACTAGCCGGAGGCTCATGACGTCAGAATCTGAGGATGAGTTCCCATCTTGGGTCAATGAAGAGAAGAAACGGCTTTTATTGGCGGCTCCGGGTGAAATCACGGCCGATGTGGTTGTAGCTAAAGATGGTAGTGGAAAGTACAAGACTCTCAATGAGGCCTTGGTTGATATCCCAAAGAAGAGTAACAAGACCTTTGTGATTCACGTCAAGGAAGGAGTGTATACAGAACACGTTGTTTTCGACAAGCATATGACTAATGTCATGTTGCTCGGAGACGGCCCCACCAAGACCAAGATCACCTACAACAAGAACTTTGCCGATGGAGTCCAGACATTCAAGACTGCCACACTTGCGGCAATGGGGAGTAATTTCATGGCAAAGGATATTGGAATCGAGAACTCGGCCGGAGCTGCGAAGCACCAAGCGGTTGCACTCCGTATCCAGGCAGATTTTTCAATCATCTACAACTGCCAGCTGGACGGGTACCAAGACACACTCTACGCACACGCTCACCGCCAATTCTACCGTGACTGTGTCATTACAGGAACAATCGACTTCATCTTCGGAGACGCCAAGGCTATCTTCCAAAACTGCAAGATGATTGTTAGGAAACCGGGCGACAACCAAAGATGCATCGTACTTGCACAAGGAAGGATGTCAGAACACGCTATATCCGCCCTCATCCTCCAGAACTGCACCATCTCTGCGGACCCAGTTTACTTCCCGGTGAGGCATGTTCTCAAGTCGTACCTTGCCAGGCCGTGGAAGAACTTCTCGCGGTCAATCATAATGCAGTCTCAAATCGATGATTTGATTCAGCCTGAAGGTTGGCTTCCATGGATGGGTGATTTTGCTTTAAAAACTTGTTACTTTGCTGAGTTCGGGAACAGGGGTGCCGGTTCAGACACATCGAAGAGAGTGGCATGGCCAGGCGTTAAGAAGATTGATTTGGCCACGGCTCAGACGTTTACGCCCGGAAAGTTCTTTGAAGGCGGCGATGCTTGGATTAGGAGCTCTGGCTTGCCATACTACCCGAACATGCTACCATAA 1716 49.71 MPNGTNNASGKKKKIALLSVGSVLLVAMVVAVAVGLSGGKQSKGRGEGSNDISTSTKAVKAVCEPTDYKETCEKTLTSAAGNTSDPKELIKTGFKVAVDYLEGAVHNSSVVAELAKDPMTNQALQNCKELIGYSVDDINDSIDRLGSFDIANFDDYVADMKVWLTGAVTFIETCQDGFENTTGKAGDKMKELLKTGRELTFNALAMVSQITSVLTSLHIPTSTSRRLMTSESEDEFPSWVNEEKKRLLLAAPGEITADVVVAKDGSGKYKTLNEALVDIPKKSNKTFVIHVKEGVYTEHVVFDKHMTNVMLLGDGPTKTKITYNKNFADGVQTFKTATLAAMGSNFMAKDIGIENSAGAAKHQAVALRIQADFSIIYNCQLDGYQDTLYAHAHRQFYRDCVITGTIDFIFGDAKAIFQNCKMIVRKPGDNQRCIVLAQGRMSEHAISALILQNCTISADPVYFPVRHVLKSYLARPWKNFSRSIIMQSQIDDLIQPEGWLPWMGDFALKTCYFAEFGNRGAGSDTSKRVAWPGVKKIDLATAQTFTPGKFFEGGDAWIRSSGLPYYPNMLP 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 626754 628558 + Conep04aG0014200.1 Cone4ag0137 435115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0137 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Cone4ag0137 571 Gene3D - 252 569 IPR012334 -
Cone4ag0137 571 CDD PMEI-like_3 61 212 - -
Cone4ag0137 571 NCBIfam pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857(InterPro)
Cone4ag0137 571 FunFam Pectinesterase 252 569 - -
Cone4ag0137 571 SUPERFAMILY Pectin lyase-like 256 566 IPR011050 -
Cone4ag0137 571 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Cone4ag0137 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Cone4ag0137 571 Pfam Pectinesterase 258 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone4ag0137 571 SMART PMEI_2 54 206 IPR006501 GO:0004857(InterPro)
Cone4ag0137 571 PANTHER PECTINESTERASE 14 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone4ag0137 571 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857(InterPro)
Cone4ag0137 571 FunFam Pectinesterase 55 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0584 Cone-Chr19:5157690 Cone4ag0137 Cone-Chr4:626754 5.85E-129 dispersed
Cone4ag0137 Cone-Chr4:626754 Cone5ag0054 Cone-Chr5:269828 1.17E-140 dispersed
Cone10ag0794 Cone-Chr10:4035649 Cone4ag0137 Cone-Chr4:626754 9.11E-06 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone4ag0137 Cone-Chr4:626754 4.93E-209 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone4ag0137 Cone-Chr4:626754 9.30E-233 wgd
Cone3ag0815 Cone-Chr3:4194970 Cone4ag0137 Cone-Chr4:626754 2.73E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0137 K01051 - csv:101221958 680.633