Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0139 ATGGCGGGCCAAGTATACATCTGGATAGCCATTTCAATCCTCAGTTTCTCTCCTTTCTCAAGTCTTGCCACTGAAACTGCAGTTTCATATATGGCAGACAAGGAAGCAACGCCCCGATTTGCTTTCAGTTGGTTGGACGACAAAGACACATTCCAAGCAGGTGACATTGCATCGGTAAAAATCAAAGTGCTGGAAAACTTCGACAAGATTGACAAGAACAAGTTCAAGCCAACTTTAACTGTCAATGGGAAGACAGGGAATAGCTCTTTCATTTCTGGACTTGTTTCAAATTTTGGAGAGGACCTCAATGACTGGAGAATCTCATTCGCTCCAATCATGGTCGGTTTGTTCAACGTGGTGATCGATGAGGACCATACTGGGGTCTTCGATTCTTCCCTGCATTTCCAAGTCGTTCCAGGGAGAATTTACCCATCTGTCTCTGTTGCTATATGGAAGGGTCTAATAACCGAGTTTCAAGCCGGGACTAAAGCTTCTGTTCTGATACTTCCAAAAGATGCATTTGGAAACAATGTCACTTCCAAAGAAGAACCTAATGTGTCCACTTTCACTCTGTCCATATTTCACACGAATAACTCTATTTCCAGCCAGCCAAACATCACCTACACCGGCTGGAATGAATTCGGCTATATTGTTATTGAGTTTACCGTTAAGATTTCCGGAAGCTTCTTGTTGCATATACAAGGCGGAAACCAAACTCTGAAAGACACTCCTCTTCCATTCAAGGTGAATCCAGGACTGTTGGAGGTTTCAAATTGTGTGATCAAATGGGATTTTGAACCGAAAGCATGGCAGTTATTTTCCAAGATGGAGATATTCCTACACCAGAGAGATCAGTTTGACAATCTTGTTCCTGGACTCTATGCATTTGATGCTGAAATTGTTGAAAAGGATACAAATTTGTCTATACCCGTTTCGGATCTACATTTCGAAGAAGTCCAAGTAGGGATTCAGTTGTTTTCTTTCAGCAATTTAGAACCGGGGAATTTCTTGCTAACAATATCTGATTCTAAGCATAGTGAGAAAATATCTAACATGTCATACTCCTACACTGTCTACATAGGTTATTGTGATGGATCAAAAAGTGTGGTCAATGGAACTGACTTCAATAATTCTATTGCTGGGGAAATGGAAGCATTTTCTGTTTATTTGTATGATGTGTATCAATATCCCTCTCCAGTCAAGGTTGAATGGCTTCAGGTTCTAATTGTAAGGGAGAATGATTCCTACTACGTATGGCCAACCGTAAATCCTATGCAGATACTTAATGGGACTGGACCTGTTGGAGCTCCAGAATATCAAGCAGGAAGCAAGGATAACATTTTTAATGCATTATCCGGCAACCCAAGTGACAAATCAGTTATGGAATCGAAACTGCTGGCAAGTGCTTTCGATGTGATCTATACGCCAGATAAAACTGGATTTTACAAAGTTTACGTGTTTTGTGGAAATATTCTGTTGAATAGTGGCCATTCATTCAAAAAGGAAGTACTAGCAGGTGAAGTTAATCTAACACTCTCTGAAGTAATGGAGTTTTCTCCCAAAGTGGCTAAGTTGACTAAGAATGAAATAGTCGTCAGCCTGATGGATTCGTTTGGGAATCCCGTCCCGTCTAAACAATCAAGTCTGAAATTAGAGATTGCTTCCAATCACAGTTCAAATTGGAATGTTGTGAATAATAGTGACAGCTCATCATATACCGTTCTCTATACTGCTAATGATGTTGGAACTTACGAGATGTGTGCTTCATTGGATGGCAAAAATATACCACCCTGCCCCTTCACTGTCAATGTTTACAGTGGTGAATATTTTCCCAAGGCTTCTGATGATACTGTTTCCGTGTGGGAGGATGAGTCTATTGCTTTTGATGCTCTTGCTAATGACTTTTTTGCTGGTCATAATGCAAGTATCATGTCATTTACGAATCCTCTTCATGGTTCGGTTATGCAAAACGGACGGCTTTTCCGATACACTCCTTTCAGGGACTATTATGGGAATGACTCGTTTATGTACACTATATCAGACATAAATGCAAATCTTGCTACCGCTTCTGTAAACATTTCTGTCCTTAGTATCCCTCCCCAATTTGTTGCTTTTCCGAGTGAACTACAAGCAACTGAAGATGTCTTAAGTCCAAGATACGGTGGTTTCTCTGGATTTGAGATACGATACTCGGATTTAGCCGAGAACATTTCTGTTAACCTTAGTGCAGAGTCAGGGAGCATCTTTCTTTCACCTAGGCCTATGCAATTCGAACAGCCAATGTGGAATGTAAACAGAGGGGAAGGAGAAGCAAAGGGTCTAGTCTTAGAAGGCTGTTTAGAAGTTATCAATTTCGCTCTTCAATCAATTCAATATCTCGGAAACGGAAACTTCTGTGGTGGGGACACAATCCGAGTGTTAACTAAAAATGCAAATGGAATCAACAGCTTAGATGTTCCTATATCAGTCGAACCTATTAATGATCCTCCATATATTGTGGTGCCTGAAATCATCATCTTGAATAGTGACAAGGACGAGTCTCTAATCTTCGACCGTGAAATGGACAACTTCAACTTCTCCATTGGTGATCCTGATATTCTTTCCTTTCCTGGCGGCGAGTCTAACTTCATGGTCAGCTTTTCCGTGGAAGTTGATGAGGGTTATTTGATTACAAGTCTTCCTTCCGAGCTCATCGATACAACCGAGCTGAAGCTGAAGAATAGTTACAGGTGGCAGCCTCTTCAGACATATGTTACCATCTCTAAACACTTCACGGTCAAAGCCAGTGGAGTTAGATTTCAAGGAACTATCAGTCACTGCAATAGAATTATGCAAGAGCTACTGTATAATGGTGGAGAATACGGTGGTGTGATGACAGTGACAGTGAATGATATGGGAAACCATGGATGTTATCCAGACTGTTCCGAAATGAATTCTGTGCCTCTTTATGCTGAAGCAACTGTAAATCTTATCAGAAGACGGCCGATGAGTTCATTCTTGGCTCATGGCTTGGGGACAGCTATTGCTCTAGAATTTGTTCTGGTTGTTTCTATGGGAATGCTGACCGTGTTCTTCATGTGCAAATGTGCAATTCTGCTGCTAAATGAAAGAAGAATCAATGGAGGAGAGATCAAGAATAATGAGCGTTCAGGACTACAATCTTGTTCCAAGAGATCAAAAGCTGTAGGTTTTTTTGGTGCCAAACCATCTCTCTCCAGTCCAGTGCTTGAGGGTGGTGGAAATGAAAACGGTGATGCCTTGGCTTTGTCGTCCTTATAG 3279 41.2 MAGQVYIWIAISILSFSPFSSLATETAVSYMADKEATPRFAFSWLDDKDTFQAGDIASVKIKVLENFDKIDKNKFKPTLTVNGKTGNSSFISGLVSNFGEDLNDWRISFAPIMVGLFNVVIDEDHTGVFDSSLHFQVVPGRIYPSVSVAIWKGLITEFQAGTKASVLILPKDAFGNNVTSKEEPNVSTFTLSIFHTNNSISSQPNITYTGWNEFGYIVIEFTVKISGSFLLHIQGGNQTLKDTPLPFKVNPGLLEVSNCVIKWDFEPKAWQLFSKMEIFLHQRDQFDNLVPGLYAFDAEIVEKDTNLSIPVSDLHFEEVQVGIQLFSFSNLEPGNFLLTISDSKHSEKISNMSYSYTVYIGYCDGSKSVVNGTDFNNSIAGEMEAFSVYLYDVYQYPSPVKVEWLQVLIVRENDSYYVWPTVNPMQILNGTGPVGAPEYQAGSKDNIFNALSGNPSDKSVMESKLLASAFDVIYTPDKTGFYKVYVFCGNILLNSGHSFKKEVLAGEVNLTLSEVMEFSPKVAKLTKNEIVVSLMDSFGNPVPSKQSSLKLEIASNHSSNWNVVNNSDSSSYTVLYTANDVGTYEMCASLDGKNIPPCPFTVNVYSGEYFPKASDDTVSVWEDESIAFDALANDFFAGHNASIMSFTNPLHGSVMQNGRLFRYTPFRDYYGNDSFMYTISDINANLATASVNISVLSIPPQFVAFPSELQATEDVLSPRYGGFSGFEIRYSDLAENISVNLSAESGSIFLSPRPMQFEQPMWNVNRGEGEAKGLVLEGCLEVINFALQSIQYLGNGNFCGGDTIRVLTKNANGINSLDVPISVEPINDPPYIVVPEIIILNSDKDESLIFDREMDNFNFSIGDPDILSFPGGESNFMVSFSVEVDEGYLITSLPSELIDTTELKLKNSYRWQPLQTYVTISKHFTVKASGVRFQGTISHCNRIMQELLYNGGEYGGVMTVTVNDMGNHGCYPDCSEMNSVPLYAEATVNLIRRRPMSSFLAHGLGTAIALEFVLVVSMGMLTVFFMCKCAILLLNERRINGGEIKNNERSGLQSCSKRSKAVGFFGAKPSLSSPVLEGGGNENGDALALSSL 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 634165 638720 - Conep04aG0014400.1 Cone4ag0139 435117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0139 1092 Gene3D - 606 694 - -
Cone4ag0139 1092 Pfam Bacterial Ig domain 611 693 - -
Cone4ag0139 1092 SUPERFAMILY E set domains 362 492 IPR014756 -
Cone4ag0139 1092 Pfam Filamin/ABP280 repeat 528 601 IPR017868 -
Cone4ag0139 1092 ProSiteProfiles Filamin/ABP280 repeat profile. 507 604 IPR017868 -
Cone4ag0139 1092 PANTHER JITTERBUG, ISOFORM N 80 256 IPR044801 GO:0030036(InterPro)|GO:0051015(InterPro)
Cone4ag0139 1092 Gene3D Immunoglobulins 515 605 IPR013783 -
Cone4ag0139 1092 Gene3D Immunoglobulins 141 250 IPR013783 -
Cone4ag0139 1092 SUPERFAMILY E set domains 528 607 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0139 Cone-Chr4:634165 Cone7ag0134 Cone-Chr7:563215 2.70E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g162 . . . . . Bpe14g01122 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0134 Cone4ag0139 . . . . Blo02g00498 . . Bda13g00194 . . Bma02g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016220 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8