Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0156 ATGAAGCAGCTATGGGACCGAAATACCCTCTTTACCCTTTCCCGGCAAAGATGTCAACTTCACACTAACGCCCGGAATATCATTCAACAACTCCAGAAATGCAACGATTTGAGTGCAATATCCTCGCACTCTAAGATACTGAAATCCGGGTTCTTAAAGGACACTTTCACGACCAATCATCTCATTAACTATTACGTCAGGCTTCACAGAATTTGCAATGCGTATCAACTGCTCGAAGAAATGCCTGAACCAAACGTTGTCTCGTTTACTTCAGTCATTTCCGGTTACGTCGAGACGGGTCGACCCAGAACGGCTCTTGGGCTTTTCAGTAAATTACCTCAAAGTTTAATCACACCCAATCATTTCACATTTGCTACTGTGATCAAAGCTTGTTCAAGTCTAGCAAACTTGAAAGATGGTAGAAAATTCCATGCACAAATTGAAGTCATGGGTTTTGGAGATAATCTTGTGATCTGTTCTTCACTTGTTGATATGTATGGGAAATGCAATGATGTTGATGAAGCTCGATTGGTTTTCGATTCTATGCCTTGTAAGAACATCGTTTCTTGGACTTCAATGATCGTTGCTTATGCGCAAAACGGACAAGGTGAAGATGCGCTCCAACTTTTCAGGAACTACAATGGTTCCATGTCTGGTTTACCTAACCATTTTATGTTAGTTAGCGTCATAAGTGCCTGTGCAAGTTTGGGTCGGTTAGTTTCTGGAAAAGCAGCTCATGGATCAGTGATTCGCCGTCTGCATGATTTGAATGATATTATTACAAGTGCTTTGATTGACATGTATGCTAAAAGTGGGAGCATAGATTATTCTGAGAAGATCTTCAGTAAAATCTTGAACCCATCTGTTATTCACTACACTTCAATGATTATGAGTAGAGCAAAGTATGGACTTGGGAAATCAGCCTTAGAATTATTTGAAGAAATGATAGCTAAAAGACTAAGACCCAATCACGTCACATTTGTAGGTGTATTGTATGCTTGTAGCCATTCAGGACTTGTAGATGAAGGACTTGCACGCTTCAAAACCATGGATAAGGAACATGGGATCACGCCTGACACAAAGCACTATACATGCCTTGTTGATATGTTGGGTCGAACGGGCCGGCTTGACGAAGCCTATGAGCTAGCAAATTTGACTAAAGTCAAACCAGATGAAGGCGCATTGTTGTGGGGTACGCTTCTTTCAGCCAGTAGGGTCCACGGGAGGGTAGATATTGCCGTGGAAGCAAGCAATCAACTGATAGAGTCTAACCGCCAAGTGGCAGGGGCATACGTGACATTGTCCAATGCTTATGCATCGGCTGGAGACTTAGAAAATGCCCACAAAATCCGTTCGAAAATGAAGCATACAGGAGTTTCAAAAGAACCCGGGTGCAGTTGGGTTGAGATAAAGGACTCGACTTACGTGTTTTATGCAGGCGATTTAGCTTCGTGTGAAAGAAGCGGCGAAGTGGTAGAGATGTTGAGGGAATTGGGAAGGAAGATGAAGGAGAAAGGGTACGATGGAGGGAAGAGTATGGGGCTGGTTTTTGTAGAAGTGGAAGAGGAGGCAAAACAGGAGATGGTGGGTTTGCATAGTGAGAGATTGGCTTTGGCTTTTGCGTTGATAACTGTACCAAAAGGAGTGACTATTAGGATAATGAAGAACTTGAGAATGTGTTGGGATTGCCATGAGGCTTTTAAGCTGATTAGCGAGATTGTGGAGAGGGAATTTGTTGTAAGAGATGTGAACAGGTTTCATCATTTTATAGGTGGATCTTGCACTTGCATGAACTTCTGGTGA 1803 42.65 MKQLWDRNTLFTLSRQRCQLHTNARNIIQQLQKCNDLSAISSHSKILKSGFLKDTFTTNHLINYYVRLHRICNAYQLLEEMPEPNVVSFTSVISGYVETGRPRTALGLFSKLPQSLITPNHFTFATVIKACSSLANLKDGRKFHAQIEVMGFGDNLVICSSLVDMYGKCNDVDEARLVFDSMPCKNIVSWTSMIVAYAQNGQGEDALQLFRNYNGSMSGLPNHFMLVSVISACASLGRLVSGKAAHGSVIRRLHDLNDIITSALIDMYAKSGSIDYSEKIFSKILNPSVIHYTSMIMSRAKYGLGKSALELFEEMIAKRLRPNHVTFVGVLYACSHSGLVDEGLARFKTMDKEHGITPDTKHYTCLVDMLGRTGRLDEAYELANLTKVKPDEGALLWGTLLSASRVHGRVDIAVEASNQLIESNRQVAGAYVTLSNAYASAGDLENAHKIRSKMKHTGVSKEPGCSWVEIKDSTYVFYAGDLASCERSGEVVEMLRELGRKMKEKGYDGGKSMGLVFVEVEEEAKQEMVGLHSERLALAFALITVPKGVTIRIMKNLRMCWDCHEAFKLISEIVEREFVVRDVNRFHHFIGGSCTCMNFW 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 727473 729307 + Conep04aG0016200.1 Cone4ag0156 435134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0156 600 Pfam E motif 408 469 IPR046848 -
Cone4ag0156 600 FunFam Pentatricopeptide repeat-containing protein 100 242 - -
Cone4ag0156 600 Gene3D Tetratricopeptide repeat domain 137 247 IPR011990 GO:0005515(InterPro)
Cone4ag0156 600 Gene3D Tetratricopeptide repeat domain 7 136 IPR011990 GO:0005515(InterPro)
Cone4ag0156 600 Gene3D Tetratricopeptide repeat domain 263 434 IPR011990 GO:0005515(InterPro)
Cone4ag0156 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Cone4ag0156 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Cone4ag0156 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cone4ag0156 600 SUPERFAMILY TPR-like 168 450 IPR011990 GO:0005515(InterPro)
Cone4ag0156 600 Pfam DYW family of nucleic acid deaminases 514 600 IPR032867 GO:0008270(InterPro)
Cone4ag0156 600 NCBIfam pentatricopeptide repeat 292 323 IPR002885 -
Cone4ag0156 600 NCBIfam pentatricopeptide repeat 157 187 IPR002885 -
Cone4ag0156 600 NCBIfam pentatricopeptide repeat 188 211 IPR002885 -
Cone4ag0156 600 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 259 487 - -
Cone4ag0156 600 Pfam PPR repeat family 84 132 IPR002885 -
Cone4ag0156 600 Pfam PPR repeat family 287 335 IPR002885 -
Cone4ag0156 600 Pfam PPR repeat 262 284 IPR002885 -
Cone4ag0156 600 Pfam PPR repeat 188 211 IPR002885 -
Cone4ag0156 600 Pfam PPR repeat 362 382 IPR002885 -
Cone4ag0156 600 Pfam PPR repeat 157 187 IPR002885 -
Cone4ag0156 600 PANTHER OS07G0578800 PROTEIN-RELATED 217 483 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0156 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0156 Cone-Chr4:727473 Cone9ag1171 Cone-Chr9:8352117 3.67E-148 dispersed
Cone7ag0161 Cone-Chr7:658228 Cone4ag0156 Cone-Chr4:727473 1.82E-75 transposed
Cone4ag0156 Cone-Chr4:727473 Cone7ag0160 Cone-Chr7:657457 1.26E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29