Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0157 ATGGAGGAGAATAATACTGAGCTTGAGGAAGGTGAAGCCTGCCTCTATATGGATGATGACAATAACAATGGTCCTGACGTTAACTTCTCCATCAACATTGAGGAGAGGCTCCAACATGCTTTAGGTCATCTTCAAAAAGATTTTGAAGGTGGCGTTTCTGCCGAGAACTTAGGGGCAAAATTTGGGGGCTATGGTTCATTTTTACCCACTCATGAATGTTCACGTTCTATTCGGTCTCATTCAAAAACTCCGCAAAAGATTTGCAATACACCCAAGTCATCTGACAGTTTACCCTTGGAGGGTGCCTTTCAGAATTCAAAAGCTTCTTCAAATTTATCTCCATCTCTGGGGTCTGTGGCTGCTTCCTGTGGTGCCAATCTATGGCATAATACAAGGGCGGCTGTTGGAGATGTTTCTGGAAAGCAAGAGTTTTGCTGTCCTTCTACTCAAGCTACTAACGGGCGTCCTTCGAAAAATGAAACTTCAAATAGATCAGGCAATCTTACTGACCAAGGATCTTTGAAGGTGCGACTCAAAGTTGGTTATGACACCACTGCACAAAAAAATGCTGCTCTATATAGTGGCCTTGGCCTTGATGACTCTCCGTATTCATCATCTGGAAATAGTCTTGATGAAAAGGAAGGGATGCTACCTATGTCTCAGGATACTTTGGAACAGTCCCCCTATGATATTATACAGGTTATGGCTGACTTTGTTGTGCCTGGAGGATTATTGGTATCACCGCTTGCTGATAGTTTGCTTTGGCTCTCGAGAAAGAAAAAGCCCCACAGAGTCGGTAAACCCTTGGGTTCCCCCAAGATCCTCCCTGCATTCCCGACAGCTGCAACCCTAGGCGAGAGCAAGGTATCAAAACAGAAGAAAAAGAGATCAAGAGATGAGGAGGAAAGTGGGGTAGAATTGAAGCATAGGAACGATAGAAGCCTTGAGAATAAGATGAAAAGTTTCAAGAATAAAAAATCAGAAAAATTCCCCCCAGGAGGAAAGGAGATTCTGACTAGAGAGTTAAAATGTGCATCTAACTCCATATCTGGTGATGGTGATTCTGTGAAAGAAATTTGTAGGTTGTCTGATGTTTCTAGGGAGTTCAGTAAGGTTCGGGTGAAGGATACATTATTTTCCTCTGAATCAGGAGAGCAGTCATTGAAACCAGTTTCTGGGCAGGAGTGTCTCAAGAATGACATGGAATATTTGAGGAGTGGTTTAGTGGAACAGGTTGTGGTGCACAAATTAGTAAATTCTTACAATGAGAATCTACTTGGCCTTAGAGATAATGGCAGGTTTGAGTGTAAGAAAATTTCTGCCCCATTGAAAGATCACTGTGACCTATCCAGATCAACTGATGATTTAGATTTACACAGAAAAGCCTCTCAGAGTGCTAACAGTCACATGGATGGAGAAAATCATATACTGTCTAGGAAGGAAAAGCCGGCTTATGAGAGCAAGAAGAAGCTGAAGGTATTGCAAAGTAACAGTAATATTGTGGCTGCTTCAACAAAGGATTGTCCTAGGTTGGAAACCGGAGCAGTAACAAAAGTTAAAAAGAGTGCAAATTGTCATACTTCTCTAAGTAAAAGTAATAGAGATAAGTTTAAATCTCGGATCGATAAGAAAGTCAGAGATAGTCACATAGATTCTTTGCAGATCTCAAATGTTGGAAATCTAAGTGATTGGCCTGATGGCTCGAAATTTGATGATGAAATGGAATGGCATTCAAGGGGAAATAAACCTAATGAAAAATCAAATAGTTTGGATACAACAGAGAGAGCTCTCAGTAATTGGCGGGATGGCTCTAACATTAATGATGATGAAATGGAATGGCTTCAAAGGGGAAATAAACCGAAGGAAAAGTTAAATGGTAAGAGAATAAACTCTCAAATGTCTGTGGTGTCTGTAACAGATTCACAAAGTGGATCTATACCTGTTGCTGAAACTGGACCAATTTCTGAAGTCGTTAGTACAGCTGTTCCACCTGTTTTGGTCAAAGATGTTTGGGCATGTTGTGACAGTTGTCAGACGTGGCGCCTTCTGCCCTATGGCACAGATGAGAAGAAACTTCCCGACAAATGGTTGTGCAGCATGCAAACTTGGCTACCTGGGATGAACCGGTGTGGCATCAGTATGGATGATTCAGAAAAAGCATTCCATGCATTATACCAACCTCCAGTCTTTGAGACTCTTAATAACTTAGAAAGTACTACTAATGGAATGGTATTAGGAGTACCTTCAGCCGATGTCAGACACATTGATCAAAATATTGAAGGCTTCAGTTCCCAAACAATATCAAATCAAAGAAAGAATAAATTTTTTTCAAAGGAACCACAGCCTTCAGGTGGCAGTGGCCCATTTCATGTCTTGAACTCTACTAAGACTCACCTGCAGGAATCCACAAAAAGCAGAAGCTTGAATGTCATGAAACATCCTCTGCCATATTCAAATCACATGAGGAAGTCATTGAATGATACAAATCAAGTGAAAATGAAAATGAAAATGAAGAAGGAAGCAGATCAATTTGGTCATGGAGCTGGAAATTCGAAGAAACCTAAGACAGAAGATATACACTTCTCTGATAGACATACAGACTCCAAAATAGACATTGGACAAGCTAGTCTAATTTCAAGTACTGGATTTCCAGCTGGGGCACATAGGAAAGATATGCAGGAAGACAATGAAATTGGTTTTTCTGAGGACAGAAAATGTGCCACAAAGGGCAAGATACTCCCCTCTGGAAAAAATCTGGGAGAACAAGTCCAGGTTTCATCAAGGACCTTGGACGTGACACCAAGCAGTAAAAGGGATTATTCTATGAAGAAACGAAAACTGAAGGAATGGCAGGAGAGTCAGAATTGTCAAAATTCTGCACTCGATGGCGGCATGCATTTGAAGGATAGTAGCAAGAATGGACTCAAATGGGACAAGAAGTCAAAGTTATCAAAGACTGGGGTGAGGGATTCCAGTACTGGTGATGCCGACTTTAACTCAAAGAAAAAGGGTATGGTGGTGCGAATAAGCTCTTCAGGCATTAGAGGTTGCTTGGTTAATGACAGGGGAGAAATGAGAGACTCTGATAAGGAAGAGGAAGTCATCAAACCTGGTATAAAAGATGTGTCCAGACAGACTTTGGATGGTGGAGACTCGGTGAGAAGAAATAGAGGATCTAAGCAAATTTCACATGTGTCTACTTCAAGCTCTTCAAAAGTTTCAGTGTCTCGTAAGAGTGATATGAACTTTGATGCAGATACCATGGAGTGTCCTGGGAGGTGCTCTGATGGTCTAAATGGTGGTATGGGACATTCAAATGATGGACTGAGGATTAAAATGTCCTCCCACCACAAATTATTGTTACCTCAAAATGAGTACTCATCTTTGTGGTCAATGGACAAGGAGAGAGCTACCACATTTGATTTTGATTCAGACAAAATGCAGGCTTCTGAACCGGCTGTCAAGCTCTCAAGAAAGAGCATGAACTATGAGTCAAAGTTTGTCCCTGACAGTGGGAAGCGTGATTCTGAAACAGTGGCTGAAGTCAAACTGAGTATTCCTAAAAGGATTGGCTCCAATTTGAGCAGGAATGAGAACAAACGTTTTCATACAAAGGATTTTGCATGGTCAACTGACAATGGAGTGGAAACTCAAGTAAAGGACCTAGAGGGTTCTGAAGTGAGATCATTGCTTCCTCTCTTTATAAAAAATGGGAAGGTAACCTCCCAGCATAATCTGGTTCTGGACTCTGTGGGTGAGAGTAAGGCTGATATTGTGCCAGTAGAATCAAGGAGTGGGAAATCAAAATATATGAGGCATTCTGAAGGTGAAGGTAAACAAGAGAAAGTGACACTTTCTCGACCTCTACCAGAATTCGCAGGTACTTTTAAGGGATGTCCAATTGACACTCACAATGATGTGTTGAAGGCATCTAAAGATTCTAGCCAGAATGGAATTAGTCATAGTAAAAAACAGCTAATGCCTGATCGACAAGGCTATAGAGATCTTGTTGCATCCAGTCCCAATGGAATTAATTCATCCAGTCCCAATGGAATTAATTCATCCAGTCCCAATGGAATTAATTCATCCAGTCTGGCTACCAGTAATACACTGAAAAAGGCCCAAGAGCTTAGAGACTATGCTGATCGCCTTAAGAGCTCTGGATTTGGTTTTGAAAGTAATGAGGCTTACTTCCAAGCTGCCCTAAAGTTTCTTCGTGGAGCTTCACTTCTAGAAGGTTCTAAAAGTGGAAAAAATGGGGAGATGACTCAATTGCAGCTCTACAGTAATGCAGCTAAACTTTGCAAAGTTTGTGCTCAAGAGTCTGAAAAATGCCAAGAAATGGGCTCTGCTGCTTTGGCTTATAAATGCATGGAAGTGGCTTATATGAGGGTAGTTTACAGTAAGCATTCTAGCACGAGCAAAGACCGGCATGAGTTGCAAGTATCATTACAAGCAGCTCCCCAAGGTGAGTCCCCGTCTTCTTCTGCATCGGATGTTGACAACTTGAACAACCATGCACCAATGGATAGGACTGCTCTATCCAAGTGTACCAGTTCGCCTATTACTGGAAGTCATGTGATTCTTGTTCGAAACAGCCTCAATTTTTGTCGGGTGCTTGATTTTACTCAAGACATAAACATGGCAATGGAGGCCTCTAGAAAATCCCTGAATGCTTTTGCAGTTGCTAAAGCAACTGCAGAAGAGGCACGATATACTGAGTGTGTTGCTTCCATCAGGAGGGTGATTGATTTCAGCTTCCAAGATGTTGAGGAATTCCTCCGTCTGATTGCGATTGCTTTGGAGGCCATAAACAGATCAGGTTTTGGTCGTGCTAGAGATTAA 4845 41.63 MEENNTELEEGEACLYMDDDNNNGPDVNFSINIEERLQHALGHLQKDFEGGVSAENLGAKFGGYGSFLPTHECSRSIRSHSKTPQKICNTPKSSDSLPLEGAFQNSKASSNLSPSLGSVAASCGANLWHNTRAAVGDVSGKQEFCCPSTQATNGRPSKNETSNRSGNLTDQGSLKVRLKVGYDTTAQKNAALYSGLGLDDSPYSSSGNSLDEKEGMLPMSQDTLEQSPYDIIQVMADFVVPGGLLVSPLADSLLWLSRKKKPHRVGKPLGSPKILPAFPTAATLGESKVSKQKKKRSRDEEESGVELKHRNDRSLENKMKSFKNKKSEKFPPGGKEILTRELKCASNSISGDGDSVKEICRLSDVSREFSKVRVKDTLFSSESGEQSLKPVSGQECLKNDMEYLRSGLVEQVVVHKLVNSYNENLLGLRDNGRFECKKISAPLKDHCDLSRSTDDLDLHRKASQSANSHMDGENHILSRKEKPAYESKKKLKVLQSNSNIVAASTKDCPRLETGAVTKVKKSANCHTSLSKSNRDKFKSRIDKKVRDSHIDSLQISNVGNLSDWPDGSKFDDEMEWHSRGNKPNEKSNSLDTTERALSNWRDGSNINDDEMEWLQRGNKPKEKLNGKRINSQMSVVSVTDSQSGSIPVAETGPISEVVSTAVPPVLVKDVWACCDSCQTWRLLPYGTDEKKLPDKWLCSMQTWLPGMNRCGISMDDSEKAFHALYQPPVFETLNNLESTTNGMVLGVPSADVRHIDQNIEGFSSQTISNQRKNKFFSKEPQPSGGSGPFHVLNSTKTHLQESTKSRSLNVMKHPLPYSNHMRKSLNDTNQVKMKMKMKKEADQFGHGAGNSKKPKTEDIHFSDRHTDSKIDIGQASLISSTGFPAGAHRKDMQEDNEIGFSEDRKCATKGKILPSGKNLGEQVQVSSRTLDVTPSSKRDYSMKKRKLKEWQESQNCQNSALDGGMHLKDSSKNGLKWDKKSKLSKTGVRDSSTGDADFNSKKKGMVVRISSSGIRGCLVNDRGEMRDSDKEEEVIKPGIKDVSRQTLDGGDSVRRNRGSKQISHVSTSSSSKVSVSRKSDMNFDADTMECPGRCSDGLNGGMGHSNDGLRIKMSSHHKLLLPQNEYSSLWSMDKERATTFDFDSDKMQASEPAVKLSRKSMNYESKFVPDSGKRDSETVAEVKLSIPKRIGSNLSRNENKRFHTKDFAWSTDNGVETQVKDLEGSEVRSLLPLFIKNGKVTSQHNLVLDSVGESKADIVPVESRSGKSKYMRHSEGEGKQEKVTLSRPLPEFAGTFKGCPIDTHNDVLKASKDSSQNGISHSKKQLMPDRQGYRDLVASSPNGINSSSPNGINSSSPNGINSSSLATSNTLKKAQELRDYADRLKSSGFGFESNEAYFQAALKFLRGASLLEGSKSGKNGEMTQLQLYSNAAKLCKVCAQESEKCQEMGSAALAYKCMEVAYMRVVYSKHSSTSKDRHELQVSLQAAPQGESPSSSASDVDNLNNHAPMDRTALSKCTSSPITGSHVILVRNSLNFCRVLDFTQDINMAMEASRKSLNAFAVAKATAEEARYTECVASIRRVIDFSFQDVEEFLRLIAIALEAINRSGFGRARD 1614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 730912 738797 - Conep04aG0016300.1 Cone4ag0157 435135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0157 1614 PANTHER CW-TYPE ZINC FINGER 3 1606 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 572 602 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1311 1365 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1485 1505 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 969 986 - -
Cone4ag0157 1614 ProSiteProfiles Zinc finger CW-type profile. 665 718 IPR011124 GO:0008270(InterPro)
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1020 1039 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1477 1505 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 288 334 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 285 334 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 937 951 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 463 484 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 919 936 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 882 999 - -
Cone4ag0157 1614 Gene3D - 665 719 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1059 1080 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 585 602 - -
Cone4ag0157 1614 Pfam CW-type Zinc Finger 671 715 IPR011124 GO:0008270(InterPro)
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1262 1284 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 888 910 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 148 170 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1338 1365 - -
Cone4ag0157 1614 MobiDBLite consensus disorder prediction 1019 1080 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0157 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0861 Cone-Chr11:7137803 Cone4ag0157 Cone-Chr4:730912 9.55E-104 dispersed
Cone4ag0157 Cone-Chr4:730912 Cone7ag0159 Cone-Chr7:657388 0 dispersed
Cone17ag0496 Cone-Chr17:2444640 Cone4ag0157 Cone-Chr4:730912 8.57E-64 wgd
Cone18ag0697 Cone-Chr18:3731195 Cone4ag0157 Cone-Chr4:730912 7.82E-107 wgd
Cone20ag0925 Cone-Chr20:6656086 Cone4ag0157 Cone-Chr4:730912 5.67E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46