Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0158 ATGGCACCATCGAGAAAATCTAGAAGTGTGAATAAGCGTTTCTCTTACATCAATGAGGGTTCCCCAGAAAAATTTGGAGAAAATGGTAGCAAAAGCAGGCAGAAGAAGAGGAAGTTTACTGACATGTTAGGGCCTCAGTGGAGCAAGGAGGAGCTTCAGCGTTTCTATGAAGCTTATCGTAAGTATGGAAAAGATTGGAGGAAGGTGGCCACTATGGTACACAACCGTTCTGTGGATATGGTAGAGGCTCTTTACACCATGAATAGGGCCTACTTATCTCTACCAGAGGGCACAGCTTCGGTGGTTGGGCTAATAGCAATGATGACCGATCACTACTGTGTACTGGGAGGAAGTGATAGTGAAGAAAGCAATGAGGGCTCAGGAGCAACAAGAAAGCCTCAAAAGCAAGCATGTGGAAAGCTACGTAGTAACAACTCTAGAGGGTTAGAAGGAAATTTCGGAGAGGTATCAACATCAAGTTATGGCTGCTTGTCGTTGTTGAAGAAGAGACGCTCTGGAATTAAGCCTCATGCTGTTGGAAAACGGACTCCCCGGGTCCCTGTGTCATTTTCTTATGATAAAGATAACAAAGACAAGTATGTTTCACCTGCTAGGCAAGATTTGAAGCCTAAGATAGATGCTGATGATGATGTTACCCATGAGATAGCATTAGCATTGACAGAGGCTTCACAGAGAGGCGATTCTCAAACGCCTAACCAAAAAGCAGAAGATCTTTGGCCTTCACATGTTCGGACTGGTGACAGAGTGCGAAGTGAATCAGAAATGACTAGTGCCAAGCTTCGTTGTAGTGAAATGGATGACAGAGGAAGCACGGGAGCAGATAATGCAGACTATGACAGAGGAAAAGGTTATTTGATATCCAGAGAAAGTGCTGGTCCTGTTGAGGTTCAACAGAAGGGGAAAAGGTACCATAAAAAGAAGCTAGAAGTTGACGAGAGTGTTAACAATCATTTGGATGATATCAAGGAAGCCTATAGTGGGACAGAAGAGGGACAAAAGTTGGTTTCTGTGAAGTCCTCTTTAAAGGGCTTGAGGAAGAGAAGTAAAAAAGTTTTGCTCGGAGGAGATGAAAGCCCTGCTTTTGATGCACTACAAGCTTTGGCAGATCTATCCTTGATGATGCCAGGAACAACTATTGACTCAGAGTCCTCTGCAAAGGGTAAGGAAGCAAAGCTTGATGTTGTAGATAAGTTTAAACTGAAAGGAAGTCATTCAATTGTGGGAGCTGAAGTCACTGCTTCCAAAACATCTAAAACGACAAAAGTCTATAGTCACAATATTGATGCTATACCTGAGGCAAAGGACAGACCCCCGCCAGCTATTACTGGAACTCGGAAAAGGAAAATGAAAATTTCGCCATTTAAGGCTATAGAAGAAGGAAATAAATCTTTTAGTAAAGGTATACGCTCTCCACATAATGCTGGACCTGCAAAGCCTGGGAAATCGGTGAAAGCACCAGAACATTTATCTTCAAGTTCTGACCATAGAAGGGAAGAGAATGATTCTGCTTTATTGATTGCACCAGTTCCATCTGCAAACCAGGTTACCTTACATAGCAAAGTGAGGAGCAAGCGAAAGACAGACCATCATAATTTCAGTATGCAGAAAGATGCCAAGTCCTCTGTAAAAAGTTTAGCTGACCAATCAAAGCCTCTCCATGACAGACTGCTTTATAATAAGGGGAAGCTTTCTAATTGCCTTTCTTTGCATCAAGTACGGAGATGGTGTGCTTGTGAGTGGTTTTACAGTGCAATTGACTATCCATGGTTTGCTAAATGTGAGTTTGTGGAATACTTGAATCATGTTGGATTGGATCACATTCCTAGATTAACTCGTGTTGAATGGAGTGTCATTCGGAGCTCCCTTGGAAGACCTCGGAGATTTTCTCAGCAATTCTTGAAGGAAGAAAAACAGAAGCTCAATCTATACCGTGAAACTGTTAGGCAACATTATGCAGAAGTACGTGCTGGTACTAGGGAAGGACTTCCAACTGATTTAGCTCAGCCTTTGTCTGTCGGGCAACGTGTAGTTGCAGTTCATCCTAGGACCTGGGAGATTTATGACGGAAGTGTACTCACTGTTGACTATAGCAGGTGCAGGGTTCAGTTTGACCAGCCTGAATTAGGGGTCGAGTTTGTCATGGATATTGATTGTATACCTGTAAATCCAATGGAAAATTTGCCCGCATCTGTGATAAGGCAGAGTTTCAGCTTTGAATGCTTTGATAAATTCTTTGGGTACCTCGATGAGCTCAAGATCAATGCCCAACTCAAAGAAGGGAAGATTGGAGATTTTCTGAAATCTGCTCCAAATGTAAATCTAGAAAAATCTGATGGCCACACGTTTCTTTCCCCTTCAGCTCATCACGTTGGTAAACTATTAAAGCAGTCAAAGGTGGACTTGACATCTCCTAATTTATTAGCTAAATTTGGGACCTATACCCAACAAGTGGTGAATTCTCAGCCTTCTGTCCTTCCACAGTTCCAAGCAAAAGAAGCTGATGTTCAAGCCCTTTCTGAGTTGACACGTTTTCTTGACAAGAAGGAAGCTCTTGTATCGGAATTGAGGCGAATGAATGATGAGGTGTCAGAAAACCAGAAATATGGAGACCACTTACTCAAGGATTGTGAGTACTTCAAGAAGCAATATGCTGCTATTCTCTTACTGTTAAATGAAGTCAACGAGCAGGTTTCCTATGCTCTATTTTGCTTGAGGCAGAGAAATACATATCAAGGAACTTCTCAGCCTATGTTGTTGAACCCAGTGGCCGATTTAGGTGACCCTGGCTTTCAAGCTCAAGAACATGGATCTCATGTAACTGAAATCGTGGAAGGTTCTAGAACAAAAGCCCGGAAGATGGTTGAGGTGGCTATACAGGCAATGTCCACTATGAAAAATGGAGAAAATAACATCGAAACTATTGAAGAGGCGATTGATTTTGTTAACAATAAAGTTTCTATAGATGATTTGGCTTTGCCAGCCACGAAATCTGCTAATGCAGATGCAAAGCATGTCACTCTGGCTTGTTCTCAGAATAATTCAAACTCCTGTCCACCAAATCCAGTGGAAACTAGTCAAGGAGTGGACCCTAATTCGAACAGTGCATCTGAGCAAAGAGAGACAGAGATTCCCTCGGAACTTATCACACATTGTGTGGCTACTTTACTTATGATTCAGAAGTGTACAGAAAGGCAGTTCCCACCAGCTGAAGTTGCTCAGGTTCTAGATTCAGCTGTGAATCGTTTGCAGCCATGTTGTTCACAGAACCTTCCAATTTATGCAGAGATACATAAATGCATGGGGATTATTAGGAGTCAAATACTCGCCCTCATTCCGACCTAG 3363 42.46 MAPSRKSRSVNKRFSYINEGSPEKFGENGSKSRQKKRKFTDMLGPQWSKEELQRFYEAYRKYGKDWRKVATMVHNRSVDMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYCVLGGSDSEESNEGSGATRKPQKQACGKLRSNNSRGLEGNFGEVSTSSYGCLSLLKKRRSGIKPHAVGKRTPRVPVSFSYDKDNKDKYVSPARQDLKPKIDADDDVTHEIALALTEASQRGDSQTPNQKAEDLWPSHVRTGDRVRSESEMTSAKLRCSEMDDRGSTGADNADYDRGKGYLISRESAGPVEVQQKGKRYHKKKLEVDESVNNHLDDIKEAYSGTEEGQKLVSVKSSLKGLRKRSKKVLLGGDESPAFDALQALADLSLMMPGTTIDSESSAKGKEAKLDVVDKFKLKGSHSIVGAEVTASKTSKTTKVYSHNIDAIPEAKDRPPPAITGTRKRKMKISPFKAIEEGNKSFSKGIRSPHNAGPAKPGKSVKAPEHLSSSSDHRREENDSALLIAPVPSANQVTLHSKVRSKRKTDHHNFSMQKDAKSSVKSLADQSKPLHDRLLYNKGKLSNCLSLHQVRRWCACEWFYSAIDYPWFAKCEFVEYLNHVGLDHIPRLTRVEWSVIRSSLGRPRRFSQQFLKEEKQKLNLYRETVRQHYAEVRAGTREGLPTDLAQPLSVGQRVVAVHPRTWEIYDGSVLTVDYSRCRVQFDQPELGVEFVMDIDCIPVNPMENLPASVIRQSFSFECFDKFFGYLDELKINAQLKEGKIGDFLKSAPNVNLEKSDGHTFLSPSAHHVGKLLKQSKVDLTSPNLLAKFGTYTQQVVNSQPSVLPQFQAKEADVQALSELTRFLDKKEALVSELRRMNDEVSENQKYGDHLLKDCEYFKKQYAAILLLLNEVNEQVSYALFCLRQRNTYQGTSQPMLLNPVADLGDPGFQAQEHGSHVTEIVEGSRTKARKMVEVAIQAMSTMKNGENNIETIEEAIDFVNNKVSIDDLALPATKSANADAKHVTLACSQNNSNSCPPNPVETSQGVDPNSNSASEQRETEIPSELITHCVATLLMIQKCTERQFPPAEVAQVLDSAVNRLQPCCSQNLPIYAEIHKCMGIIRSQILALIPT 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 739747 748820 - Conep04aG0016400.1 Cone4ag0158 435136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0158 1120 Gene3D - 4 99 - -
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 119 152 - -
Cone4ag0158 1120 Coils Coil 971 991 - -
Cone4ag0158 1120 ProSiteProfiles Myb-like domain profile. 47 77 IPR001005 -
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 1 38 - -
Cone4ag0158 1120 SMART sant 43 91 IPR001005 -
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 1 16 - -
Cone4ag0158 1120 Coils Coil 640 660 - -
Cone4ag0158 1120 Coils Coil 848 872 - -
Cone4ag0158 1120 PANTHER LIN-9 1 1120 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 1017 1048 - -
Cone4ag0158 1120 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Cone4ag0158 1120 SMART DIRP_2 588 689 IPR033471 -
Cone4ag0158 1120 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Cone4ag0158 1120 CDD SANT 47 81 IPR001005 -
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 120 152 - -
Cone4ag0158 1120 Pfam Myb-like DNA-binding domain 46 82 IPR001005 -
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 522 551 - -
Cone4ag0158 1120 Pfam DIRP 587 688 IPR033471 -
Cone4ag0158 1120 MobiDBLite consensus disorder prediction 437 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0158 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0766 Cone-Chr10:3871624 Cone4ag0158 Cone-Chr4:739747 2.32E-218 wgd
Cone3ag0789 Cone-Chr3:4042366 Cone4ag0158 Cone-Chr4:739747 3.83E-213 wgd
Cone4ag0158 Cone-Chr4:739747 Cone7ag0162 Cone-Chr7:669439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45897 PF06749 DUF1218 6.20E-19 No_clan Cone TF