Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0160 ATGGCAACCGTTTCAGCATTTTTCGTTCCTCAAGCTGTGTCTCGCCCTAGAACTGATGCAAATACTCGTAGACCTTTAAAGCCGGTGAAGCTTCCGCGGAATCCCAATCGTAATCGGAATAGGGTTAAGATTGAAGGCGGTCCGAAGGAGTTGTCCTCCATCGGCGTCGATGCGACCACCTACACTCGTCTTCCTCCTAAGGAAGACTTCTCTGTTCCCATTTTTGACTCTTATCCTTCTTCGACTTCTCCGTTTACGTCTGAGGTGAAGCTCTCCGATTCAGATATCGCGAAGATTGAGAAGAAAGTTCGTAATGTGAAAAAAAGAGACGATGAAGATGAAGATGAGGAGGAGGAGGAGGAGGAAGTGGAAGTTCTTGGGTTCTATGAAGGCAATTTTGATTCTGACCAAGAAGAAGAAGAAGGAGAAGTCTTTGAAGGTGAGCTTGAAGAAGGAGATGTGAAGGAGAAAGGAGTACCAGCAGTAATGCGTTGTTTCGACCGAGCAAAAATCTTTGTGAAATCTGGAGATGGTGGAAACGGGGTTATGGCATTCAGGCGAGAGAAGTTCGTCCCCTTGGGGGGGCCATCTGGAGGATGTGGAGGGAGAGGTGGTAATGTATATGTTGAAGTAGACGGCTCGATGAATTCTCTGCTACCATTCCGGAATAGTCTGCATTTTCGGGCAGGGAGGGGAAGTCACGGGCAGGGGAAGATGATGGATGGGGCAAAGGGAGAGGATGTGGTTGTGAAGGTGGCTCCAGGAACGGTTATAAGAGAGGCGGGTAAAGAGGAAGTGCTTTTGGAGTTGTTGCATCCTGGGCAGAGAGCTTTGTTATTGCCAGGCGGGAGAGGCGGGAGAGGGAATGCCTCCTTCAAGACCGGGACTAATAAGGTGCCTAAGATAGCTGAAGATGGAGAAGAAGGTCCAGAAATGTGGTTGGAGTTAGAACTAAAGCTGGTTGCCGATGTAGGAATAATTGGAGCTCCAAATGCAGGGAAAAGCACACTTCTTAGTGTTGTAAGTGCTGCCCAACCAGCCATAGCTAATTACCCCTTTACCACTTTACTTCCCAATTTGGGTGTAGTTTCATTCGACTATGATTCTACAATGGTAGTAGCGGACCTTCCTGGTTTACTTGAAGGTGCACACCGAGGTTTTGGTTTGGGTCACGAATTTCTACGACACACTGAAAGGTGTTCGATTTTGGTGCATGTAGTTGATGGGTCGGGACCACAGCCAGAATTTGAGTTTGAGGCGGTTCGTTTGGAGTTGGAACTGTTTAGTCCTGAACTAGCCGAAAAGCCGTATGTTGTTGCTTATAACAAGATGGACCTTCCAGAAGCATATGAGAACTGGCCAGCTTTCAGGGAAAAGCTACGAGCTCAAGGGATTGAACCTTTTTGCATGAGTGCAGTGCAAAGAGAGGGCACTCATGAAGTGATTTCGGCTGCTTTTCAGATTCTAAGGAAAAATAAAAATGCCGAGGAGTTTGAAGGTTGGGAAAATTCAGAAAATCTAAACCATGTAGCTGATATGGTACAGAAGCAGCGAAGTGCATCTATCAATGAATTTGAGATAGTCCGGGACAAGAGTACGAACTCGTGGCATGTAACTGGATCTGGTCTGCAACGCTTTGTTCAAATGACAAATTGGCGATATACAGAGTCTGATAGAAGGTTTCAACATGTTTTGGATGCTTGTGGCGTGAATAAATCGCTCATTAAACTTGGCGTCAAGGAAGGTGACACTGTGTTCATCGCAGAGATGGAGATGGTTTGGCATGATTCACTCAATACTTCTGGGGCCTCTAATACGAAGAAACGACCAAGCGGTTCAACTAGGTGGCCCCAGGTGATGTAA 1863 46.65 MATVSAFFVPQAVSRPRTDANTRRPLKPVKLPRNPNRNRNRVKIEGGPKELSSIGVDATTYTRLPPKEDFSVPIFDSYPSSTSPFTSEVKLSDSDIAKIEKKVRNVKKRDDEDEDEEEEEEEVEVLGFYEGNFDSDQEEEEGEVFEGELEEGDVKEKGVPAVMRCFDRAKIFVKSGDGGNGVMAFRREKFVPLGGPSGGCGGRGGNVYVEVDGSMNSLLPFRNSLHFRAGRGSHGQGKMMDGAKGEDVVVKVAPGTVIREAGKEEVLLELLHPGQRALLLPGGRGGRGNASFKTGTNKVPKIAEDGEEGPEMWLELELKLVADVGIIGAPNAGKSTLLSVVSAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSILVHVVDGSGPQPEFEFEAVRLELELFSPELAEKPYVVAYNKMDLPEAYENWPAFREKLRAQGIEPFCMSAVQREGTHEVISAAFQILRKNKNAEEFEGWENSENLNHVADMVQKQRSASINEFEIVRDKSTNSWHVTGSGLQRFVQMTNWRYTESDRRFQHVLDACGVNKSLIKLGVKEGDTVFIAEMEMVWHDSLNTSGASNTKKRPSGSTRWPQVM 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 756989 760081 - Conep04aG0016600.1 Cone4ag0160 435138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0160 620 MobiDBLite consensus disorder prediction 104 123 - -
Cone4ag0160 620 NCBIfam Obg family GTPase CgtA 166 489 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag0160 620 CDD Obg 322 489 IPR031167 GO:0005525(InterPro)
Cone4ag0160 620 Hamap GTPase Obg [obg]. 164 490 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag0160 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 491 IPR027417 -
Cone4ag0160 620 Pfam GTP1/OBG 167 320 IPR006169 -
Cone4ag0160 620 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 132 497 IPR045086 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005739(PANTHER)
Cone4ag0160 620 FunFam GTPase Obg 321 500 - -
Cone4ag0160 620 SUPERFAMILY Obg GTP-binding protein C-terminal domain 524 596 IPR036346 -
Cone4ag0160 620 Gene3D GTP1/OBG domain 161 320 IPR036726 -
Cone4ag0160 620 SUPERFAMILY Obg GTP-binding protein N-terminal domain 166 320 IPR036726 -
Cone4ag0160 620 ProSiteProfiles Obg C-terminal (OCT) domain profile. 517 596 IPR015349 GO:0000166(InterPro)
Cone4ag0160 620 ProSitePatterns GTP1/OBG family signature. 375 388 IPR006074 GO:0005525(InterPro)
Cone4ag0160 620 Gene3D - 321 503 IPR027417 -
Cone4ag0160 620 PRINTS GTP1/OBG GTP-binding protein family signature 345 363 IPR006073 GO:0005525(InterPro)
Cone4ag0160 620 PRINTS GTP1/OBG GTP-binding protein family signature 373 388 IPR006073 GO:0005525(InterPro)
Cone4ag0160 620 PRINTS GTP1/OBG GTP-binding protein family signature 390 408 IPR006073 GO:0005525(InterPro)
Cone4ag0160 620 PRINTS GTP1/OBG GTP-binding protein family signature 324 344 IPR006073 GO:0005525(InterPro)
Cone4ag0160 620 Gene3D - 524 597 IPR036346 -
Cone4ag0160 620 MobiDBLite consensus disorder prediction 599 620 - -
Cone4ag0160 620 Pfam Domain of unknown function (DUF1967) 525 594 IPR015349 GO:0000166(InterPro)
Cone4ag0160 620 Pfam 50S ribosome-binding GTPase 323 443 IPR006073 GO:0005525(InterPro)
Cone4ag0160 620 Coils Coil 96 116 - -
Cone4ag0160 620 FunFam GTPase Obg 163 320 - -
Cone4ag0160 620 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 322 490 IPR031167 GO:0005525(InterPro)
Cone4ag0160 620 MobiDBLite consensus disorder prediction 1 87 - -
Cone4ag0160 620 ProSiteProfiles Obg domain profile. 163 321 IPR006169 -
Cone4ag0160 620 NCBIfam Obg family GTPase CgtA C-terminal domain 525 594 IPR015349 GO:0000166(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1242 Cone-Chr11:9293267 Cone4ag0160 Cone-Chr4:756989 2.01E-37 dispersed
Cone18ag0349 Cone-Chr18:1707999 Cone4ag0160 Cone-Chr4:756989 2.86E-17 dispersed
Cone4ag0160 Cone-Chr4:756989 Cone4ag1943 Cone-Chr4:13705184 2.34E-59 dispersed
Cone4ag0160 Cone-Chr4:756989 Cone7ag0164 Cone-Chr7:687894 1.01E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33