Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0161 ATGTTGAAATCCGGAACTATAGGCTTAGTTGTGTTAGGAGTTCTTGCATTTGTGGCAATCAGCATTGGATTTGTGTGGTTCTGTAAGACTAAATGTAAGAACTTCTCAAACAGGAATTCAGAAACTGGATCGTCAGATCCTTCTGCATTAGTGGAGTGGAGTAGGGGTGGACCTGGTACCGGAGCTAGTGGTCCGTCTTTTCCGGGCCCACCAGGAGGAAGGCAGTTCAAATTGGAAGGGTTGGAGCAAGCTACTAAGAAATTCAGTGAAAATAATCTCATCGGGTATGGAAGCTTCGGTCCGGTTTATATAGGTTTTCTCCCTGATGGGACTATGGTGGCTGTCAAAAGGCGGCCGGGTGGCCCACTACCGGAATTTGAAGCAGAGGTGAATTGTCTGGCCGAGATTCAGCATAGGAACTTGGTTACCTTACTGGGTTACTGCCAAGAAAGAGGATCTCAAATTTTGGTTTATGAATACTTACCGAATGGAAACATGTCCAATCACCTCTATGGTACTTTACTAGATCGGTCGACTAAACTGGAGTTCAAGCAGAGGCTATCTATAGCTCTAGGTGCAGCTAAAGGTTTAAGCTACCTGCACAGCCTAAAACCTCCCTTGGTACACAAAAACTTCAAAACAGCTAATGTCCTGGTCGATGAAAACTTCATTGCTAAGGTTGCAGATGCTGGCGTCTCACGACTACTCCGAAGGATAGAAGAAGGCAGCCCTTCTCAGACTTCTAGTGTCAATATTTTCAAGGATCCTGAGATAGGAGCAACCGGGTTTGCCTCTGAAGCCAGTGATGTTTACAGCTTTGGGGTGTTTCTCATGGAGCTTATAACTGGACACGAAGCTCCGCATATAGACTCTTTTGGGTCTAACGAAAGCTTATTCCAATGGGTTGAATCTCGACTGAATACAAATGACTTCGTCGACAATCGCCTTGTTGGAAGCTTCACTATAGAGGGAATGGGGAATTTGATCAGGCTGGTATTACACTGCATGAGTTTTCCGGGTAAAAGGCGGCCAGTGATGGAGAGGGTTGTGCACAAGCTAGAACGGATTCAAGAGAAAGAGATGGCTTTAACTACAATCATGAGTGAGGGCACTCCCAAGATTACTCTAGGCAGTGAGTTGTTTACTTCATGA 1152 45.4 MLKSGTIGLVVLGVLAFVAISIGFVWFCKTKCKNFSNRNSETGSSDPSALVEWSRGGPGTGASGPSFPGPPGGRQFKLEGLEQATKKFSENNLIGYGSFGPVYIGFLPDGTMVAVKRRPGGPLPEFEAEVNCLAEIQHRNLVTLLGYCQERGSQILVYEYLPNGNMSNHLYGTLLDRSTKLEFKQRLSIALGAAKGLSYLHSLKPPLVHKNFKTANVLVDENFIAKVADAGVSRLLRRIEEGSPSQTSSVNIFKDPEIGATGFASEASDVYSFGVFLMELITGHEAPHIDSFGSNESLFQWVESRLNTNDFVDNRLVGSFTIEGMGNLIRLVLHCMSFPGKRRPVMERVVHKLERIQEKEMALTTIMSEGTPKITLGSELFTS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 761011 762985 - Conep04aG0016700.1 Cone4ag0161 435139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0161 383 FunFam Protein kinase superfamily protein 161 370 - -
Cone4ag0161 383 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 68 160 - -
Cone4ag0161 383 Gene3D Transferase(Phosphotransferase) domain 1 161 372 - -
Cone4ag0161 383 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 15 360 IPR047117 -
Cone4ag0161 383 MobiDBLite consensus disorder prediction 37 73 - -
Cone4ag0161 383 SUPERFAMILY Protein kinase-like (PK-like) 67 354 IPR011009 -
Cone4ag0161 383 ProSiteProfiles Protein kinase domain profile. 88 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0161 383 Gene3D Phosphorylase Kinase; domain 1 71 160 - -
Cone4ag0161 383 Pfam Protein tyrosine and serine/threonine kinase 92 353 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0161 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1297 Cone-Chr11:9587207 Cone4ag0161 Cone-Chr4:761011 1.81E-67 dispersed
Cone16ag1037 Cone-Chr16:10003640 Cone4ag0161 Cone-Chr4:761011 2.12E-84 dispersed
Cone4ag0161 Cone-Chr4:761011 Cone19ag1467 Cone-Chr19:9518524 1.41E-53 dispersed
Cone4ag0161 Cone-Chr4:761011 Cone7ag0165 Cone-Chr7:691471 7.90E-250 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g341 . . . . . Bpe14g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0165 Cone4ag0161 . . . . Blo02g00519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016693 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82721 None None None None Cone PK